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SMIM12 (small integral membrane protein 12)

Identity

Alias_namesC1orf212
chromosome 1 open reading frame 212
Alias_symbol (synonym)FLJ90372
Other alias
HGNC (Hugo) SMIM12
LocusID (NCBI) 113444
Atlas_Id 73563
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 35315963 and ends at 35324646 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM12   25154
Cards
Entrez_Gene (NCBI)SMIM12  113444  small integral membrane protein 12
AliasesC1orf212
GeneCards (Weizmann)SMIM12
Ensembl hg19 (Hinxton)ENSG00000163866 [Gene_View]  chr1:35315963-35324646 [Contig_View]  SMIM12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163866 [Gene_View]  chr1:35315963-35324646 [Contig_View]  SMIM12 [Vega]
ICGC DataPortalENSG00000163866
TCGA cBioPortalSMIM12
AceView (NCBI)SMIM12
Genatlas (Paris)SMIM12
WikiGenes113444
SOURCE (Princeton)SMIM12
Genetics Home Reference (NIH)SMIM12
Genomic and cartography
GoldenPath hg19 (UCSC)SMIM12  -     chr1:35315963-35324646 -  1p34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SMIM12  -     1p34.3   [Description]    (hg38-Dec_2013)
EnsemblSMIM12 - 1p34.3 [CytoView hg19]  SMIM12 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBISMIM12 [Mapview hg19]  SMIM12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI467795 AK074853 BC011880 BC034598 BC064320
RefSeq transcript (Entrez)NM_001164824 NM_001164825 NM_138428
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)SMIM12
Cluster EST : UnigeneHs.661594 [ NCBI ]
CGAP (NCI)Hs.661594
Alternative Splicing GalleryENSG00000163866
Gene ExpressionSMIM12 [ NCBI-GEO ]   SMIM12 [ EBI - ARRAY_EXPRESS ]   SMIM12 [ SEEK ]   SMIM12 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113444
GTEX Portal (Tissue expression)SMIM12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EX1
Splice isoforms : SwissVarQ96EX1
PhosPhoSitePlusQ96EX1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM12
DMDM Disease mutations113444
Blocks (Seattle)SMIM12
SuperfamilyQ96EX1
Human Protein AtlasENSG00000163866
Peptide AtlasQ96EX1
HPRD14002
IPIIPI00168370   IPI00974416   IPI00386616   
Protein Interaction databases
DIP (DOE-UCLA)Q96EX1
IntAct (EBI)Q96EX1
FunCoupENSG00000163866
BioGRIDSMIM12
STRING (EMBL)SMIM12
ZODIACSMIM12
Ontologies - Pathways
QuickGOQ96EX1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM12
Atlas of Cancer Signalling NetworkSMIM12
Wikipedia pathwaysSMIM12
Orthology - Evolution
OrthoDB113444
GeneTree (enSembl)ENSG00000163866
Phylogenetic Trees/Animal Genes : TreeFamSMIM12
HOVERGENQ96EX1
HOGENOMQ96EX1
Homologs : HomoloGeneSMIM12
Homology/Alignments : Family Browser (UCSC)SMIM12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM12
dbVarSMIM12
ClinVarSMIM12
1000_GenomesSMIM12 
Exome Variant ServerSMIM12
ExAC (Exome Aggregation Consortium)SMIM12 (select the gene name)
Genetic variants : HAPMAP113444
Genomic Variants (DGV)SMIM12 [DGVbeta]
DECIPHER (Syndromes)1:35315963-35324646  ENSG00000163866
CONAN: Copy Number AnalysisSMIM12 
Mutations
ICGC Data PortalSMIM12 
TCGA Data PortalSMIM12 
Broad Tumor PortalSMIM12
OASIS PortalSMIM12 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM12
BioMutasearch SMIM12
DgiDB (Drug Gene Interaction Database)SMIM12
DoCM (Curated mutations)SMIM12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM12 (select a term)
intoGenSMIM12
Cancer3DSMIM12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM12
Genetic Testing Registry SMIM12
NextProtQ96EX1 [Medical]
TSGene113444
GENETestsSMIM12
Huge Navigator SMIM12 [HugePedia]
snp3D : Map Gene to Disease113444
BioCentury BCIQSMIM12
ClinGenSMIM12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113444
Chemical/Pharm GKB GenePA162378876
Clinical trialSMIM12
Miscellaneous
canSAR (ICR)SMIM12 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM12
EVEXSMIM12
GoPubMedSMIM12
iHOPSMIM12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:12 CET 2017

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