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SMIM14 (small integral membrane protein 14)

Identity

Alias_namesC4orf34
chromosome 4 open reading frame 34
Alias_symbol (synonym)FLJ13289
Other alias
HGNC (Hugo) SMIM14
LocusID (NCBI) 201895
Atlas_Id 73565
Location 4p14  [Link to chromosome band 4p14]
Location_base_pair Starts at 39552546 and ends at 39640481 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ITSN2 (2p23.3) / SMIM14 (4p14)RELB (19q13.32) / SMIM14 (4p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM14   27321
Cards
Entrez_Gene (NCBI)SMIM14  201895  small integral membrane protein 14
AliasesC4orf34
GeneCards (Weizmann)SMIM14
Ensembl hg19 (Hinxton) [Gene_View]  chr4:39552546-39640481 [Contig_View]  SMIM14 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:39552546-39640481 [Contig_View]  SMIM14 [Vega]
TCGA cBioPortalSMIM14
AceView (NCBI)SMIM14
Genatlas (Paris)SMIM14
WikiGenes201895
SOURCE (Princeton)SMIM14
Genetics Home Reference (NIH)SMIM14
Genomic and cartography
GoldenPath hg19 (UCSC)SMIM14  -     chr4:39552546-39640481 -  4p14   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SMIM14  -     4p14   [Description]    (hg38-Dec_2013)
EnsemblSMIM14 - 4p14 [CytoView hg19]  SMIM14 - 4p14 [CytoView hg38]
Mapping of homologs : NCBISMIM14 [Mapview hg19]  SMIM14 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023351 AK130274 AK307146 BC008502 HQ447886
RefSeq transcript (Entrez)NM_174921
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)SMIM14
Cluster EST : UnigeneHs.576320 [ NCBI ]
CGAP (NCI)Hs.576320
Gene ExpressionSMIM14 [ NCBI-GEO ]   SMIM14 [ EBI - ARRAY_EXPRESS ]   SMIM14 [ SEEK ]   SMIM14 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201895
GTEX Portal (Tissue expression)SMIM14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QK8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QK8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QK8
Splice isoforms : SwissVarQ96QK8
PhosPhoSitePlusQ96QK8
Domains : Interpro (EBI)Uncharacterised_CD034/YQF4   
Domain families : Pfam (Sanger)DUF2615 (PF11027)   
Domain families : Pfam (NCBI)pfam11027   
Domain structure : Prodom (Prabi Lyon)Uncharacterised_CD034/YQF4 (PD288703)   
Conserved Domain (NCBI)SMIM14
DMDM Disease mutations201895
Blocks (Seattle)SMIM14
SuperfamilyQ96QK8
Peptide AtlasQ96QK8
HPRD14129
IPIIPI00044965   IPI00964867   IPI00966468   IPI00963979   
Protein Interaction databases
DIP (DOE-UCLA)Q96QK8
IntAct (EBI)Q96QK8
BioGRIDSMIM14
STRING (EMBL)SMIM14
ZODIACSMIM14
Ontologies - Pathways
QuickGOQ96QK8
Ontology : AmiGOendoplasmic reticulum  endoplasmic reticulum membrane  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum  endoplasmic reticulum membrane  integral component of membrane  
NDEx NetworkSMIM14
Atlas of Cancer Signalling NetworkSMIM14
Wikipedia pathwaysSMIM14
Orthology - Evolution
OrthoDB201895
Phylogenetic Trees/Animal Genes : TreeFamSMIM14
HOVERGENQ96QK8
HOGENOMQ96QK8
Homologs : HomoloGeneSMIM14
Homology/Alignments : Family Browser (UCSC)SMIM14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM14
dbVarSMIM14
ClinVarSMIM14
1000_GenomesSMIM14 
Exome Variant ServerSMIM14
ExAC (Exome Aggregation Consortium)SMIM14 (select the gene name)
Genetic variants : HAPMAP201895
Genomic Variants (DGV)SMIM14 [DGVbeta]
DECIPHER (Syndromes)4:39552546-39640481  
CONAN: Copy Number AnalysisSMIM14 
Mutations
ICGC Data PortalSMIM14 
TCGA Data PortalSMIM14 
Broad Tumor PortalSMIM14
OASIS PortalSMIM14 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM14
BioMutasearch SMIM14
DgiDB (Drug Gene Interaction Database)SMIM14
DoCM (Curated mutations)SMIM14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM14 (select a term)
intoGenSMIM14
Cancer3DSMIM14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM14
Genetic Testing Registry SMIM14
NextProtQ96QK8 [Medical]
TSGene201895
GENETestsSMIM14
Huge Navigator SMIM14 [HugePedia]
snp3D : Map Gene to Disease201895
BioCentury BCIQSMIM14
ClinGenSMIM14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201895
Chemical/Pharm GKB GenePA162379760
Clinical trialSMIM14
Miscellaneous
canSAR (ICR)SMIM14 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM14
EVEXSMIM14
GoPubMedSMIM14
iHOPSMIM14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:12 CET 2017

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