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SMIM15 (small integral membrane protein 15)

Identity

Alias_namesC5orf43
chromosome 5 open reading frame 43
Alias_symbol (synonym)DKFZP686E2158
Other alias
HGNC (Hugo) SMIM15
LocusID (NCBI) 643155
Atlas_Id 73566
Location 5q12.1  [Link to chromosome band 5q12]
Location_base_pair Starts at 61157709 and ends at 61162475 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SMIM15 (5q12.1) / SMIM15 (5q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM15   33861
Cards
Entrez_Gene (NCBI)SMIM15  643155  small integral membrane protein 15
AliasesC5orf43
GeneCards (Weizmann)SMIM15
Ensembl hg19 (Hinxton)ENSG00000188725 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188725 [Gene_View]  chr5:61157709-61162475 [Contig_View]  SMIM15 [Vega]
ICGC DataPortalENSG00000188725
TCGA cBioPortalSMIM15
AceView (NCBI)SMIM15
Genatlas (Paris)SMIM15
WikiGenes643155
SOURCE (Princeton)SMIM15
Genetics Home Reference (NIH)SMIM15
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM15  -     chr5:61157709-61162475 -  5q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM15  -     5q12.1   [Description]    (hg19-Feb_2009)
EnsemblSMIM15 - 5q12.1 [CytoView hg19]  SMIM15 - 5q12.1 [CytoView hg38]
Mapping of homologs : NCBISMIM15 [Mapview hg19]  SMIM15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK291180 BC014242 BC047489 BC066550 BC103711
RefSeq transcript (Entrez)NM_001048249
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM15
Cluster EST : UnigeneHs.508479 [ NCBI ]
CGAP (NCI)Hs.508479
Alternative Splicing GalleryENSG00000188725
Gene ExpressionSMIM15 [ NCBI-GEO ]   SMIM15 [ EBI - ARRAY_EXPRESS ]   SMIM15 [ SEEK ]   SMIM15 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643155
GTEX Portal (Tissue expression)SMIM15
Human Protein AtlasENSG00000188725-SMIM15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3B0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3B0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3B0
Splice isoforms : SwissVarQ7Z3B0
PhosPhoSitePlusQ7Z3B0
Domains : Interpro (EBI)Smim15   
Domain families : Pfam (Sanger)UPF0542 (PF15086)   
Domain families : Pfam (NCBI)pfam15086   
Conserved Domain (NCBI)SMIM15
DMDM Disease mutations643155
Blocks (Seattle)SMIM15
SuperfamilyQ7Z3B0
Human Protein Atlas [tissue]ENSG00000188725-SMIM15 [tissue]
Peptide AtlasQ7Z3B0
IPIIPI00384971   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3B0
IntAct (EBI)Q7Z3B0
FunCoupENSG00000188725
BioGRIDSMIM15
STRING (EMBL)SMIM15
ZODIACSMIM15
Ontologies - Pathways
QuickGOQ7Z3B0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM15
Atlas of Cancer Signalling NetworkSMIM15
Wikipedia pathwaysSMIM15
Orthology - Evolution
OrthoDB643155
GeneTree (enSembl)ENSG00000188725
Phylogenetic Trees/Animal Genes : TreeFamSMIM15
HOVERGENQ7Z3B0
HOGENOMQ7Z3B0
Homologs : HomoloGeneSMIM15
Homology/Alignments : Family Browser (UCSC)SMIM15
Gene fusions - Rearrangements
Fusion: Tumor Portal SMIM15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM15
dbVarSMIM15
ClinVarSMIM15
1000_GenomesSMIM15 
Exome Variant ServerSMIM15
ExAC (Exome Aggregation Consortium)ENSG00000188725
GNOMAD BrowserENSG00000188725
Genetic variants : HAPMAP643155
Genomic Variants (DGV)SMIM15 [DGVbeta]
DECIPHERSMIM15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM15 
Mutations
ICGC Data PortalSMIM15 
TCGA Data PortalSMIM15 
Broad Tumor PortalSMIM15
OASIS PortalSMIM15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM15
BioMutasearch SMIM15
DgiDB (Drug Gene Interaction Database)SMIM15
DoCM (Curated mutations)SMIM15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM15 (select a term)
intoGenSMIM15
Cancer3DSMIM15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM15
Genetic Testing Registry SMIM15
NextProtQ7Z3B0 [Medical]
TSGene643155
GENETestsSMIM15
Target ValidationSMIM15
Huge Navigator SMIM15 [HugePedia]
snp3D : Map Gene to Disease643155
BioCentury BCIQSMIM15
ClinGenSMIM15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643155
Chemical/Pharm GKB GenePA162380269
Clinical trialSMIM15
Miscellaneous
canSAR (ICR)SMIM15 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM15
EVEXSMIM15
GoPubMedSMIM15
iHOPSMIM15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:28:05 CET 2017

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