Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SMIM15 (small integral membrane protein 15)

Identity

Alias (NCBI)C5orf43
HGNC (Hugo) SMIM15
HGNC Alias symbDKFZP686E2158
HGNC Previous nameC5orf43
HGNC Previous namechromosome 5 open reading frame 43
LocusID (NCBI) 643155
Atlas_Id 73566
Location 5q12.1  [Link to chromosome band 5q12]
Location_base_pair Starts at 61157704 and ends at 61162468 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SMIM15 (5q12.1) / SMIM15 (5q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SMIM15   33861
Cards
Entrez_Gene (NCBI)SMIM15    small integral membrane protein 15
AliasesC5orf43
GeneCards (Weizmann)SMIM15
Ensembl hg19 (Hinxton)ENSG00000188725 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188725 [Gene_View]  ENSG00000188725 [Sequence]  chr5:61157704-61162468 [Contig_View]  SMIM15 [Vega]
ICGC DataPortalENSG00000188725
TCGA cBioPortalSMIM15
AceView (NCBI)SMIM15
Genatlas (Paris)SMIM15
SOURCE (Princeton)SMIM15
Genetics Home Reference (NIH)SMIM15
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM15  -     chr5:61157704-61162468 -  5q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM15  -     5q12.1   [Description]    (hg19-Feb_2009)
GoldenPathSMIM15 - 5q12.1 [CytoView hg19]  SMIM15 - 5q12.1 [CytoView hg38]
ImmunoBaseENSG00000188725
Genome Data Viewer NCBISMIM15 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK291180 BC014242 BC047489 BC066550 BC103711
RefSeq transcript (Entrez)NM_001048249
Consensus coding sequences : CCDS (NCBI)SMIM15
Gene ExpressionSMIM15 [ NCBI-GEO ]   SMIM15 [ EBI - ARRAY_EXPRESS ]   SMIM15 [ SEEK ]   SMIM15 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM15 [ Firebrowse - Broad ]
GenevisibleExpression of SMIM15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643155
GTEX Portal (Tissue expression)SMIM15
Human Protein AtlasENSG00000188725-SMIM15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3B0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3B0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3B0
PhosPhoSitePlusQ7Z3B0
Domains : Interpro (EBI)Smim15   
Domain families : Pfam (Sanger)UPF0542 (PF15086)   
Domain families : Pfam (NCBI)pfam15086   
Conserved Domain (NCBI)SMIM15
SuperfamilyQ7Z3B0
AlphaFold pdb e-kbQ7Z3B0   
Human Protein Atlas [tissue]ENSG00000188725-SMIM15 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3B0
IntAct (EBI)Q7Z3B0
BioGRIDSMIM15
STRING (EMBL)SMIM15
ZODIACSMIM15
Ontologies - Pathways
QuickGOQ7Z3B0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM15
Atlas of Cancer Signalling NetworkSMIM15
Wikipedia pathwaysSMIM15
Orthology - Evolution
OrthoDB643155
GeneTree (enSembl)ENSG00000188725
Phylogenetic Trees/Animal Genes : TreeFamSMIM15
Homologs : HomoloGeneSMIM15
Homology/Alignments : Family Browser (UCSC)SMIM15
Gene fusions - Rearrangements
Fusion : QuiverSMIM15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM15
dbVarSMIM15
ClinVarSMIM15
MonarchSMIM15
1000_GenomesSMIM15 
Exome Variant ServerSMIM15
GNOMAD BrowserENSG00000188725
Varsome BrowserSMIM15
ACMGSMIM15 variants
VarityQ7Z3B0
Genomic Variants (DGV)SMIM15 [DGVbeta]
DECIPHERSMIM15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM15 
Mutations
ICGC Data PortalSMIM15 
TCGA Data PortalSMIM15 
Broad Tumor PortalSMIM15
OASIS PortalSMIM15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMIM15  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSMIM15
Mutations and Diseases : HGMDSMIM15
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSMIM15
DgiDB (Drug Gene Interaction Database)SMIM15
DoCM (Curated mutations)SMIM15
CIViC (Clinical Interpretations of Variants in Cancer)SMIM15
Cancer3DSMIM15
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSMIM15
MedgenSMIM15
Genetic Testing Registry SMIM15
NextProtQ7Z3B0 [Medical]
GENETestsSMIM15
Target ValidationSMIM15
Huge Navigator SMIM15 [HugePedia]
ClinGenSMIM15
Clinical trials, drugs, therapy
MyCancerGenomeSMIM15
Protein Interactions : CTDSMIM15
Pharm GKB GenePA162380269
PharosQ7Z3B0
Clinical trialSMIM15
Miscellaneous
canSAR (ICR)SMIM15
HarmonizomeSMIM15
DataMed IndexSMIM15
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSMIM15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:21:26 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.