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SMIM17 (small integral membrane protein 17)

Identity

Other alias-
HGNC (Hugo) SMIM17
LocusID (NCBI) 147670
Atlas_Id 73567
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56643159 and ends at 56657246 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM17   27114
Cards
Entrez_Gene (NCBI)SMIM17  147670  small integral membrane protein 17
Aliases
GeneCards (Weizmann)SMIM17
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:56643159-56657246 [Contig_View]  SMIM17 [Vega]
TCGA cBioPortalSMIM17
AceView (NCBI)SMIM17
Genatlas (Paris)SMIM17
WikiGenes147670
SOURCE (Princeton)SMIM17
Genetics Home Reference (NIH)SMIM17
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM17  -     chr19:56643159-56657246 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM17  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblSMIM17 - 19q13.43 [CytoView hg19]  SMIM17 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBISMIM17 [Mapview hg19]  SMIM17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095199
RefSeq transcript (Entrez)NM_001193628
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM17
Cluster EST : UnigeneHs.336588 [ NCBI ]
CGAP (NCI)Hs.336588
Gene ExpressionSMIM17 [ NCBI-GEO ]   SMIM17 [ EBI - ARRAY_EXPRESS ]   SMIM17 [ SEEK ]   SMIM17 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147670
GTEX Portal (Tissue expression)SMIM17
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DL12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DL12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DL12
Splice isoforms : SwissVarP0DL12
PhosPhoSitePlusP0DL12
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM17
DMDM Disease mutations147670
Blocks (Seattle)SMIM17
SuperfamilyP0DL12
Peptide AtlasP0DL12
IPIIPI00888448   
Protein Interaction databases
DIP (DOE-UCLA)P0DL12
IntAct (EBI)P0DL12
BioGRIDSMIM17
STRING (EMBL)SMIM17
ZODIACSMIM17
Ontologies - Pathways
QuickGOP0DL12
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM17
Atlas of Cancer Signalling NetworkSMIM17
Wikipedia pathwaysSMIM17
Orthology - Evolution
OrthoDB147670
Phylogenetic Trees/Animal Genes : TreeFamSMIM17
HOVERGENP0DL12
HOGENOMP0DL12
Homologs : HomoloGeneSMIM17
Homology/Alignments : Family Browser (UCSC)SMIM17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM17
dbVarSMIM17
ClinVarSMIM17
1000_GenomesSMIM17 
Exome Variant ServerSMIM17
ExAC (Exome Aggregation Consortium)SMIM17 (select the gene name)
Genetic variants : HAPMAP147670
Genomic Variants (DGV)SMIM17 [DGVbeta]
DECIPHERSMIM17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM17 
Mutations
ICGC Data PortalSMIM17 
TCGA Data PortalSMIM17 
Broad Tumor PortalSMIM17
OASIS PortalSMIM17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMIM17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMIM17
BioMutasearch SMIM17
DgiDB (Drug Gene Interaction Database)SMIM17
DoCM (Curated mutations)SMIM17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM17 (select a term)
intoGenSMIM17
Cancer3DSMIM17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM17
Genetic Testing Registry SMIM17
NextProtP0DL12 [Medical]
TSGene147670
GENETestsSMIM17
Target ValidationSMIM17
Huge Navigator SMIM17 [HugePedia]
snp3D : Map Gene to Disease147670
BioCentury BCIQSMIM17
ClinGenSMIM17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147670
Chemical/Pharm GKB GenePA166048978
Clinical trialSMIM17
Miscellaneous
canSAR (ICR)SMIM17 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM17
EVEXSMIM17
GoPubMedSMIM17
iHOPSMIM17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:41:45 CEST 2017

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