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SMIM18 (small integral membrane protein 18)

Identity

Other alias-
HGNC (Hugo) SMIM18
LocusID (NCBI) 100507341
Atlas_Id 73568
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 30638600 and ends at 30645952 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM18   42973
Cards
Entrez_Gene (NCBI)SMIM18  100507341  small integral membrane protein 18
Aliases
GeneCards (Weizmann)SMIM18
Ensembl hg19 (Hinxton)ENSG00000253457 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253457 [Gene_View]  chr8:30638600-30645952 [Contig_View]  SMIM18 [Vega]
ICGC DataPortalENSG00000253457
TCGA cBioPortalSMIM18
AceView (NCBI)SMIM18
Genatlas (Paris)SMIM18
WikiGenes100507341
SOURCE (Princeton)SMIM18
Genetics Home Reference (NIH)SMIM18
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM18  -     chr8:30638600-30645952 +  8p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM18  -     8p12   [Description]    (hg19-Feb_2009)
EnsemblSMIM18 - 8p12 [CytoView hg19]  SMIM18 - 8p12 [CytoView hg38]
Mapping of homologs : NCBISMIM18 [Mapview hg19]  SMIM18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM710955 DR033682
RefSeq transcript (Entrez)NM_001206847
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM18
Cluster EST : UnigeneHs.659493 [ NCBI ]
CGAP (NCI)Hs.659493
Alternative Splicing GalleryENSG00000253457
Gene ExpressionSMIM18 [ NCBI-GEO ]   SMIM18 [ EBI - ARRAY_EXPRESS ]   SMIM18 [ SEEK ]   SMIM18 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507341
GTEX Portal (Tissue expression)SMIM18
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DKX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DKX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DKX4
Splice isoforms : SwissVarP0DKX4
PhosPhoSitePlusP0DKX4
Domains : Interpro (EBI)DUF4713   
Domain families : Pfam (Sanger)DUF4713 (PF15831)   
Domain families : Pfam (NCBI)pfam15831   
Conserved Domain (NCBI)SMIM18
DMDM Disease mutations100507341
Blocks (Seattle)SMIM18
SuperfamilyP0DKX4
Human Protein AtlasENSG00000253457
Peptide AtlasP0DKX4
IPIIPI00980156   
Protein Interaction databases
DIP (DOE-UCLA)P0DKX4
IntAct (EBI)P0DKX4
FunCoupENSG00000253457
BioGRIDSMIM18
STRING (EMBL)SMIM18
ZODIACSMIM18
Ontologies - Pathways
QuickGOP0DKX4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM18
Atlas of Cancer Signalling NetworkSMIM18
Wikipedia pathwaysSMIM18
Orthology - Evolution
OrthoDB100507341
GeneTree (enSembl)ENSG00000253457
Phylogenetic Trees/Animal Genes : TreeFamSMIM18
HOVERGENP0DKX4
HOGENOMP0DKX4
Homologs : HomoloGeneSMIM18
Homology/Alignments : Family Browser (UCSC)SMIM18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM18
dbVarSMIM18
ClinVarSMIM18
1000_GenomesSMIM18 
Exome Variant ServerSMIM18
ExAC (Exome Aggregation Consortium)SMIM18 (select the gene name)
Genetic variants : HAPMAP100507341
Genomic Variants (DGV)SMIM18 [DGVbeta]
DECIPHERSMIM18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM18 
Mutations
ICGC Data PortalSMIM18 
TCGA Data PortalSMIM18 
Broad Tumor PortalSMIM18
OASIS PortalSMIM18 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM18
BioMutasearch SMIM18
DgiDB (Drug Gene Interaction Database)SMIM18
DoCM (Curated mutations)SMIM18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM18 (select a term)
intoGenSMIM18
Cancer3DSMIM18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM18
Genetic Testing Registry SMIM18
NextProtP0DKX4 [Medical]
TSGene100507341
GENETestsSMIM18
Target ValidationSMIM18
Huge Navigator SMIM18 [HugePedia]
snp3D : Map Gene to Disease100507341
BioCentury BCIQSMIM18
ClinGenSMIM18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507341
Chemical/Pharm GKB GenePA166049095
Clinical trialSMIM18
Miscellaneous
canSAR (ICR)SMIM18 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM18
EVEXSMIM18
GoPubMedSMIM18
iHOPSMIM18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:41:45 CEST 2017

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