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SMIM19 (small integral membrane protein 19)

Identity

Alias_namesC8orf40
chromosome 8 open reading frame 40
Other alias
HGNC (Hugo) SMIM19
LocusID (NCBI) 114926
Atlas_Id 73569
Location 8p11.21  [Link to chromosome band 8p11]
Location_base_pair Starts at 42541622 and ends at 42552997 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM19   25166
Cards
Entrez_Gene (NCBI)SMIM19  114926  small integral membrane protein 19
AliasesC8orf40
GeneCards (Weizmann)SMIM19
Ensembl hg19 (Hinxton)ENSG00000176209 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176209 [Gene_View]  chr8:42541622-42552997 [Contig_View]  SMIM19 [Vega]
ICGC DataPortalENSG00000176209
TCGA cBioPortalSMIM19
AceView (NCBI)SMIM19
Genatlas (Paris)SMIM19
WikiGenes114926
SOURCE (Princeton)SMIM19
Genetics Home Reference (NIH)SMIM19
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM19  -     chr8:42541622-42552997 +  8p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM19  -     8p11.21   [Description]    (hg19-Feb_2009)
EnsemblSMIM19 - 8p11.21 [CytoView hg19]  SMIM19 - 8p11.21 [CytoView hg38]
Mapping of homologs : NCBISMIM19 [Mapview hg19]  SMIM19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK311932 BC013035 BI335341 BI463786 BI549696
RefSeq transcript (Entrez)NM_001135674 NM_001135675 NM_001135676 NM_138436
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM19
Cluster EST : UnigeneHs.655320 [ NCBI ]
CGAP (NCI)Hs.655320
Alternative Splicing GalleryENSG00000176209
Gene ExpressionSMIM19 [ NCBI-GEO ]   SMIM19 [ EBI - ARRAY_EXPRESS ]   SMIM19 [ SEEK ]   SMIM19 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114926
GTEX Portal (Tissue expression)SMIM19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96E16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96E16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96E16
Splice isoforms : SwissVarQ96E16
PhosPhoSitePlusQ96E16
Domains : Interpro (EBI)SMIM19   
Domain families : Pfam (Sanger)UPF0697 (PF15117)   
Domain families : Pfam (NCBI)pfam15117   
Conserved Domain (NCBI)SMIM19
DMDM Disease mutations114926
Blocks (Seattle)SMIM19
SuperfamilyQ96E16
Human Protein AtlasENSG00000176209
Peptide AtlasQ96E16
HPRD14005
IPIIPI00942444   IPI00982949   IPI00974089   
Protein Interaction databases
DIP (DOE-UCLA)Q96E16
IntAct (EBI)Q96E16
FunCoupENSG00000176209
BioGRIDSMIM19
STRING (EMBL)SMIM19
ZODIACSMIM19
Ontologies - Pathways
QuickGOQ96E16
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM19
Atlas of Cancer Signalling NetworkSMIM19
Wikipedia pathwaysSMIM19
Orthology - Evolution
OrthoDB114926
GeneTree (enSembl)ENSG00000176209
Phylogenetic Trees/Animal Genes : TreeFamSMIM19
HOVERGENQ96E16
HOGENOMQ96E16
Homologs : HomoloGeneSMIM19
Homology/Alignments : Family Browser (UCSC)SMIM19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM19
dbVarSMIM19
ClinVarSMIM19
1000_GenomesSMIM19 
Exome Variant ServerSMIM19
ExAC (Exome Aggregation Consortium)SMIM19 (select the gene name)
Genetic variants : HAPMAP114926
Genomic Variants (DGV)SMIM19 [DGVbeta]
DECIPHERSMIM19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM19 
Mutations
ICGC Data PortalSMIM19 
TCGA Data PortalSMIM19 
Broad Tumor PortalSMIM19
OASIS PortalSMIM19 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM19
BioMutasearch SMIM19
DgiDB (Drug Gene Interaction Database)SMIM19
DoCM (Curated mutations)SMIM19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM19 (select a term)
intoGenSMIM19
Cancer3DSMIM19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM19
Genetic Testing Registry SMIM19
NextProtQ96E16 [Medical]
TSGene114926
GENETestsSMIM19
Target ValidationSMIM19
Huge Navigator SMIM19 [HugePedia]
snp3D : Map Gene to Disease114926
BioCentury BCIQSMIM19
ClinGenSMIM19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114926
Chemical/Pharm GKB GenePA142672359
Clinical trialSMIM19
Miscellaneous
canSAR (ICR)SMIM19 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM19
EVEXSMIM19
GoPubMedSMIM19
iHOPSMIM19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:31 CEST 2017

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