Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SMIM2-IT1 (SMIM2 intronic transcript 1)

Identity

Alias_namesC13orf44-IT1
C13orf44 intronic transcript 1 (non-protein coding)
SMIM2 intronic transcript 1 (non-protein coding)
Other alias
HGNC (Hugo) SMIM2-IT1
LocusID (NCBI) 100874377
Atlas_Id 73577
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 44146470 and ends at 44158222 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM2-IT1   41492
Cards
Entrez_Gene (NCBI)SMIM2-IT1  100874377  SMIM2 intronic transcript 1
AliasesC13orf44-IT1
GeneCards (Weizmann)SMIM2-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:44146470-44158222 [Contig_View]  SMIM2-IT1 [Vega]
TCGA cBioPortalSMIM2-IT1
AceView (NCBI)SMIM2-IT1
Genatlas (Paris)SMIM2-IT1
WikiGenes100874377
SOURCE (Princeton)SMIM2-IT1
Genetics Home Reference (NIH)SMIM2-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM2-IT1  -     chr13:44146470-44158222 -  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM2-IT1  -     13q14.11   [Description]    (hg19-Feb_2009)
EnsemblSMIM2-IT1 - 13q14.11 [CytoView hg19]  SMIM2-IT1 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBISMIM2-IT1 [Mapview hg19]  SMIM2-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI476676
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM2-IT1
Cluster EST : UnigeneHs.652552 [ NCBI ]
CGAP (NCI)Hs.652552
Gene ExpressionSMIM2-IT1 [ NCBI-GEO ]   SMIM2-IT1 [ EBI - ARRAY_EXPRESS ]   SMIM2-IT1 [ SEEK ]   SMIM2-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM2-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874377
GTEX Portal (Tissue expression)SMIM2-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM2-IT1
DMDM Disease mutations100874377
Blocks (Seattle)SMIM2-IT1
Protein Interaction databases
BioGRIDSMIM2-IT1
STRING (EMBL)SMIM2-IT1
ZODIACSMIM2-IT1
Ontologies - Pathways
Huge Navigator SMIM2-IT1 [HugePedia]
snp3D : Map Gene to Disease100874377
BioCentury BCIQSMIM2-IT1
ClinGenSMIM2-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874377
Clinical trialSMIM2-IT1
Miscellaneous
canSAR (ICR)SMIM2-IT1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM2-IT1
EVEXSMIM2-IT1
GoPubMedSMIM2-IT1
iHOPSMIM2-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:41:47 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.