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SMIM2 (small integral membrane protein 2)

Identity

Alias_namesC13orf44
chromosome 13 open reading frame 44
Alias_symbol (synonym)MGC5590
Other alias
HGNC (Hugo) SMIM2
LocusID (NCBI) 79024
Atlas_Id 73570
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 44143151 and ends at 44161257 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM2   28776
Cards
Entrez_Gene (NCBI)SMIM2  79024  small integral membrane protein 2
AliasesC13orf44
GeneCards (Weizmann)SMIM2
Ensembl hg19 (Hinxton)ENSG00000139656 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139656 [Gene_View]  chr13:44143151-44161257 [Contig_View]  SMIM2 [Vega]
ICGC DataPortalENSG00000139656
TCGA cBioPortalSMIM2
AceView (NCBI)SMIM2
Genatlas (Paris)SMIM2
WikiGenes79024
SOURCE (Princeton)SMIM2
Genetics Home Reference (NIH)SMIM2
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM2  -     chr13:44143151-44161257 -  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM2  -     13q14.11   [Description]    (hg19-Feb_2009)
EnsemblSMIM2 - 13q14.11 [CytoView hg19]  SMIM2 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBISMIM2 [Mapview hg19]  SMIM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC000868
RefSeq transcript (Entrez)NM_024058
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM2
Cluster EST : UnigeneHs.730073 [ NCBI ]
CGAP (NCI)Hs.730073
Alternative Splicing GalleryENSG00000139656
Gene ExpressionSMIM2 [ NCBI-GEO ]   SMIM2 [ EBI - ARRAY_EXPRESS ]   SMIM2 [ SEEK ]   SMIM2 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79024
GTEX Portal (Tissue expression)SMIM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVW6
Splice isoforms : SwissVarQ9BVW6
PhosPhoSitePlusQ9BVW6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM2
DMDM Disease mutations79024
Blocks (Seattle)SMIM2
SuperfamilyQ9BVW6
Human Protein AtlasENSG00000139656
Peptide AtlasQ9BVW6
IPIIPI00939383   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVW6
IntAct (EBI)Q9BVW6
FunCoupENSG00000139656
BioGRIDSMIM2
STRING (EMBL)SMIM2
ZODIACSMIM2
Ontologies - Pathways
QuickGOQ9BVW6
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkSMIM2
Atlas of Cancer Signalling NetworkSMIM2
Wikipedia pathwaysSMIM2
Orthology - Evolution
OrthoDB79024
GeneTree (enSembl)ENSG00000139656
Phylogenetic Trees/Animal Genes : TreeFamSMIM2
HOVERGENQ9BVW6
HOGENOMQ9BVW6
Homologs : HomoloGeneSMIM2
Homology/Alignments : Family Browser (UCSC)SMIM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM2
dbVarSMIM2
ClinVarSMIM2
1000_GenomesSMIM2 
Exome Variant ServerSMIM2
ExAC (Exome Aggregation Consortium)SMIM2 (select the gene name)
Genetic variants : HAPMAP79024
Genomic Variants (DGV)SMIM2 [DGVbeta]
DECIPHERSMIM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM2 
Mutations
ICGC Data PortalSMIM2 
TCGA Data PortalSMIM2 
Broad Tumor PortalSMIM2
OASIS PortalSMIM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMIM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMIM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMIM2
DgiDB (Drug Gene Interaction Database)SMIM2
DoCM (Curated mutations)SMIM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM2 (select a term)
intoGenSMIM2
Cancer3DSMIM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM2
Genetic Testing Registry SMIM2
NextProtQ9BVW6 [Medical]
TSGene79024
GENETestsSMIM2
Target ValidationSMIM2
Huge Navigator SMIM2 [HugePedia]
snp3D : Map Gene to Disease79024
BioCentury BCIQSMIM2
ClinGenSMIM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79024
Chemical/Pharm GKB GenePA166048985
Clinical trialSMIM2
Miscellaneous
canSAR (ICR)SMIM2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM2
EVEXSMIM2
GoPubMedSMIM2
iHOPSMIM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:31 CEST 2017

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