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SMIM21 (small integral membrane protein 21)

Identity

Alias_namesC18orf62
chromosome 18 open reading frame 62
Other alias
HGNC (Hugo) SMIM21
LocusID (NCBI) 284274
Atlas_Id 73572
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 75409476 and ends at 75427703 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM21   27598
Cards
Entrez_Gene (NCBI)SMIM21  284274  small integral membrane protein 21
AliasesC18orf62
GeneCards (Weizmann)SMIM21
Ensembl hg19 (Hinxton)ENSG00000206026 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206026 [Gene_View]  chr18:75409476-75427703 [Contig_View]  SMIM21 [Vega]
ICGC DataPortalENSG00000206026
TCGA cBioPortalSMIM21
AceView (NCBI)SMIM21
Genatlas (Paris)SMIM21
WikiGenes284274
SOURCE (Princeton)SMIM21
Genetics Home Reference (NIH)SMIM21
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM21  -     chr18:75409476-75427703 -  18q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM21  -     18q23   [Description]    (hg19-Feb_2009)
EnsemblSMIM21 - 18q23 [CytoView hg19]  SMIM21 - 18q23 [CytoView hg38]
Mapping of homologs : NCBISMIM21 [Mapview hg19]  SMIM21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093452 AW118572 BC037871 BC105945 BC107486
RefSeq transcript (Entrez)NM_001037331 NM_001303482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM21
Cluster EST : UnigeneHs.666744 [ NCBI ]
CGAP (NCI)Hs.666744
Alternative Splicing GalleryENSG00000206026
Gene ExpressionSMIM21 [ NCBI-GEO ]   SMIM21 [ EBI - ARRAY_EXPRESS ]   SMIM21 [ SEEK ]   SMIM21 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284274
GTEX Portal (Tissue expression)SMIM21
Human Protein AtlasENSG00000206026-SMIM21 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3B7S5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3B7S5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3B7S5
Splice isoforms : SwissVarQ3B7S5
PhosPhoSitePlusQ3B7S5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM21
DMDM Disease mutations284274
Blocks (Seattle)SMIM21
SuperfamilyQ3B7S5
Human Protein Atlas [tissue]ENSG00000206026-SMIM21 [tissue]
Peptide AtlasQ3B7S5
HPRD18769
IPIIPI00401586   IPI00980722   
Protein Interaction databases
DIP (DOE-UCLA)Q3B7S5
IntAct (EBI)Q3B7S5
FunCoupENSG00000206026
BioGRIDSMIM21
STRING (EMBL)SMIM21
ZODIACSMIM21
Ontologies - Pathways
QuickGOQ3B7S5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM21
Atlas of Cancer Signalling NetworkSMIM21
Wikipedia pathwaysSMIM21
Orthology - Evolution
OrthoDB284274
GeneTree (enSembl)ENSG00000206026
Phylogenetic Trees/Animal Genes : TreeFamSMIM21
HOVERGENQ3B7S5
HOGENOMQ3B7S5
Homologs : HomoloGeneSMIM21
Homology/Alignments : Family Browser (UCSC)SMIM21
Gene fusions - Rearrangements
Fusion: Tumor Portal SMIM21
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM21
dbVarSMIM21
ClinVarSMIM21
1000_GenomesSMIM21 
Exome Variant ServerSMIM21
ExAC (Exome Aggregation Consortium)ENSG00000206026
GNOMAD BrowserENSG00000206026
Genetic variants : HAPMAP284274
Genomic Variants (DGV)SMIM21 [DGVbeta]
DECIPHERSMIM21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM21 
Mutations
ICGC Data PortalSMIM21 
TCGA Data PortalSMIM21 
Broad Tumor PortalSMIM21
OASIS PortalSMIM21 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM21
BioMutasearch SMIM21
DgiDB (Drug Gene Interaction Database)SMIM21
DoCM (Curated mutations)SMIM21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM21 (select a term)
intoGenSMIM21
Cancer3DSMIM21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM21
Genetic Testing Registry SMIM21
NextProtQ3B7S5 [Medical]
TSGene284274
GENETestsSMIM21
Target ValidationSMIM21
Huge Navigator SMIM21 [HugePedia]
snp3D : Map Gene to Disease284274
BioCentury BCIQSMIM21
ClinGenSMIM21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284274
Chemical/Pharm GKB GenePA162378613
Clinical trialSMIM21
Miscellaneous
canSAR (ICR)SMIM21 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM21
EVEXSMIM21
GoPubMedSMIM21
iHOPSMIM21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:28:07 CET 2017

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