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SMIM22 (small integral membrane protein 22)

Identity

Other aliasCASIMO1
HGNC (Hugo) SMIM22
LocusID (NCBI) 440335
Atlas_Id 73573
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4788397 and ends at 4796491 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM22   48329
Cards
Entrez_Gene (NCBI)SMIM22  440335  small integral membrane protein 22
AliasesCASIMO1
GeneCards (Weizmann)SMIM22
Ensembl hg19 (Hinxton)ENSG00000267795 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267795 [Gene_View]  chr16:4788397-4796491 [Contig_View]  SMIM22 [Vega]
ICGC DataPortalENSG00000267795
TCGA cBioPortalSMIM22
AceView (NCBI)SMIM22
Genatlas (Paris)SMIM22
WikiGenes440335
SOURCE (Princeton)SMIM22
Genetics Home Reference (NIH)SMIM22
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM22  -     chr16:4788397-4796491 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM22  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblSMIM22 - 16p13.3 [CytoView hg19]  SMIM22 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBISMIM22 [Mapview hg19]  SMIM22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA507469 BC022385 BC035868 BC048326 BC127921
RefSeq transcript (Entrez)NM_001253790 NM_001253791 NM_001253793 NM_001253794
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM22
Cluster EST : UnigeneHs.390599 [ NCBI ]
CGAP (NCI)Hs.390599
Alternative Splicing GalleryENSG00000267795
Gene ExpressionSMIM22 [ NCBI-GEO ]   SMIM22 [ EBI - ARRAY_EXPRESS ]   SMIM22 [ SEEK ]   SMIM22 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440335
GTEX Portal (Tissue expression)SMIM22
Protein : pattern, domain, 3D structure
UniProt/SwissProtK7EJ46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtK7EJ46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProK7EJ46
Splice isoforms : SwissVarK7EJ46
PhosPhoSitePlusK7EJ46
Domains : Interpro (EBI)DUF4713   
Domain families : Pfam (Sanger)DUF4713 (PF15831)   
Domain families : Pfam (NCBI)pfam15831   
Conserved Domain (NCBI)SMIM22
DMDM Disease mutations440335
Blocks (Seattle)SMIM22
SuperfamilyK7EJ46
Human Protein AtlasENSG00000267795
Peptide AtlasK7EJ46
Protein Interaction databases
DIP (DOE-UCLA)K7EJ46
IntAct (EBI)K7EJ46
FunCoupENSG00000267795
BioGRIDSMIM22
STRING (EMBL)SMIM22
ZODIACSMIM22
Ontologies - Pathways
QuickGOK7EJ46
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM22
Atlas of Cancer Signalling NetworkSMIM22
Wikipedia pathwaysSMIM22
Orthology - Evolution
OrthoDB440335
GeneTree (enSembl)ENSG00000267795
Phylogenetic Trees/Animal Genes : TreeFamSMIM22
HOVERGENK7EJ46
HOGENOMK7EJ46
Homologs : HomoloGeneSMIM22
Homology/Alignments : Family Browser (UCSC)SMIM22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM22
dbVarSMIM22
ClinVarSMIM22
1000_GenomesSMIM22 
Exome Variant ServerSMIM22
ExAC (Exome Aggregation Consortium)SMIM22 (select the gene name)
Genetic variants : HAPMAP440335
Genomic Variants (DGV)SMIM22 [DGVbeta]
DECIPHERSMIM22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM22 
Mutations
ICGC Data PortalSMIM22 
TCGA Data PortalSMIM22 
Broad Tumor PortalSMIM22
OASIS PortalSMIM22 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM22
BioMutasearch SMIM22
DgiDB (Drug Gene Interaction Database)SMIM22
DoCM (Curated mutations)SMIM22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM22 (select a term)
intoGenSMIM22
Cancer3DSMIM22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM22
Genetic Testing Registry SMIM22
NextProtK7EJ46 [Medical]
TSGene440335
GENETestsSMIM22
Target ValidationSMIM22
Huge Navigator SMIM22 [HugePedia]
snp3D : Map Gene to Disease440335
BioCentury BCIQSMIM22
ClinGenSMIM22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440335
Chemical/Pharm GKB GenePA166123737
Clinical trialSMIM22
Miscellaneous
canSAR (ICR)SMIM22 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM22
EVEXSMIM22
GoPubMedSMIM22
iHOPSMIM22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:31 CEST 2017

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