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SMIM23 (small integral membrane protein 23)

Identity

Alias_namesC5orf50
chromosome 5 open reading frame 50
Alias_symbol (synonym)LOC644994
Other alias
HGNC (Hugo) SMIM23
LocusID (NCBI) 644994
Atlas_Id 73574
Location 5q35.1  [Link to chromosome band 5q35]
Location_base_pair Starts at 171785872 and ends at 171791088 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM23   34440
Cards
Entrez_Gene (NCBI)SMIM23  644994  small integral membrane protein 23
AliasesC5orf50
GeneCards (Weizmann)SMIM23
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:171785872-171791088 [Contig_View]  SMIM23 [Vega]
TCGA cBioPortalSMIM23
AceView (NCBI)SMIM23
Genatlas (Paris)SMIM23
WikiGenes644994
SOURCE (Princeton)SMIM23
Genetics Home Reference (NIH)SMIM23
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM23  -     chr5:171785872-171791088 +  5q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM23  -     5q35.1   [Description]    (hg19-Feb_2009)
EnsemblSMIM23 - 5q35.1 [CytoView hg19]  SMIM23 - 5q35.1 [CytoView hg38]
Mapping of homologs : NCBISMIM23 [Mapview hg19]  SMIM23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)EG327678
RefSeq transcript (Entrez)NM_001289970
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM23
Cluster EST : UnigeneHs.591740 [ NCBI ]
CGAP (NCI)Hs.591740
Gene ExpressionSMIM23 [ NCBI-GEO ]   SMIM23 [ EBI - ARRAY_EXPRESS ]   SMIM23 [ SEEK ]   SMIM23 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644994
GTEX Portal (Tissue expression)SMIM23
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NLE4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NLE4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NLE4
Splice isoforms : SwissVarA6NLE4
PhosPhoSitePlusA6NLE4
Domains : Interpro (EBI)DUF4635   
Domain families : Pfam (Sanger)DUF4635 (PF15466)   
Domain families : Pfam (NCBI)pfam15466   
Conserved Domain (NCBI)SMIM23
DMDM Disease mutations644994
Blocks (Seattle)SMIM23
SuperfamilyA6NLE4
Peptide AtlasA6NLE4
IPIIPI00455659   
Protein Interaction databases
DIP (DOE-UCLA)A6NLE4
IntAct (EBI)A6NLE4
BioGRIDSMIM23
STRING (EMBL)SMIM23
ZODIACSMIM23
Ontologies - Pathways
QuickGOA6NLE4
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkSMIM23
Atlas of Cancer Signalling NetworkSMIM23
Wikipedia pathwaysSMIM23
Orthology - Evolution
OrthoDB644994
Phylogenetic Trees/Animal Genes : TreeFamSMIM23
HOVERGENA6NLE4
HOGENOMA6NLE4
Homologs : HomoloGeneSMIM23
Homology/Alignments : Family Browser (UCSC)SMIM23
Gene fusions - Rearrangements
Tumor Fusion PortalSMIM23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM23
dbVarSMIM23
ClinVarSMIM23
1000_GenomesSMIM23 
Exome Variant ServerSMIM23
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP644994
Genomic Variants (DGV)SMIM23 [DGVbeta]
DECIPHERSMIM23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM23 
Mutations
ICGC Data PortalSMIM23 
TCGA Data PortalSMIM23 
Broad Tumor PortalSMIM23
OASIS PortalSMIM23 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM23
BioMutasearch SMIM23
DgiDB (Drug Gene Interaction Database)SMIM23
DoCM (Curated mutations)SMIM23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM23 (select a term)
intoGenSMIM23
Cancer3DSMIM23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSMIM23
MedgenSMIM23
Genetic Testing Registry SMIM23
NextProtA6NLE4 [Medical]
TSGene644994
GENETestsSMIM23
Target ValidationSMIM23
Huge Navigator SMIM23 [HugePedia]
snp3D : Map Gene to Disease644994
BioCentury BCIQSMIM23
ClinGenSMIM23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644994
Chemical/Pharm GKB GenePA162380358
Clinical trialSMIM23
Miscellaneous
canSAR (ICR)SMIM23 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM23
EVEXSMIM23
GoPubMedSMIM23
iHOPSMIM23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:13:05 CET 2017

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