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SMIM24 (small integral membrane protein 24)

Identity

Alias_namesC19orf77
chromosome 19 open reading frame 77
Alias_symbol (synonym)HSPC323
Other aliasMARDI
HGNC (Hugo) SMIM24
LocusID (NCBI) 284422
Atlas_Id 73575
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 3474407 and ends at 3480542 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM24   37244
Cards
Entrez_Gene (NCBI)SMIM24  284422  small integral membrane protein 24
AliasesC19orf77; HSPC323; MARDI
GeneCards (Weizmann)SMIM24
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:3474407-3480542 [Contig_View]  SMIM24 [Vega]
TCGA cBioPortalSMIM24
AceView (NCBI)SMIM24
Genatlas (Paris)SMIM24
WikiGenes284422
SOURCE (Princeton)SMIM24
Genetics Home Reference (NIH)SMIM24
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM24  -     chr19:3474407-3480542 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM24  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblSMIM24 - 19p13.3 [CytoView hg19]  SMIM24 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBISMIM24 [Mapview hg19]  SMIM24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161441 BC146979 BC146984 BM769757 BU733823
RefSeq transcript (Entrez)NM_001136503
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM24
Cluster EST : UnigeneHs.130714 [ NCBI ]
CGAP (NCI)Hs.130714
Gene ExpressionSMIM24 [ NCBI-GEO ]   SMIM24 [ EBI - ARRAY_EXPRESS ]   SMIM24 [ SEEK ]   SMIM24 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284422
GTEX Portal (Tissue expression)SMIM24
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75264   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75264  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75264
Splice isoforms : SwissVarO75264
PhosPhoSitePlusO75264
Domains : Interpro (EBI)PDZK1IP1/SMIM24   
Domain families : Pfam (Sanger)MAP17 (PF15807)   
Domain families : Pfam (NCBI)pfam15807   
Conserved Domain (NCBI)SMIM24
DMDM Disease mutations284422
Blocks (Seattle)SMIM24
SuperfamilyO75264
Peptide AtlasO75264
IPIIPI00024925   
Protein Interaction databases
DIP (DOE-UCLA)O75264
IntAct (EBI)O75264
BioGRIDSMIM24
STRING (EMBL)SMIM24
ZODIACSMIM24
Ontologies - Pathways
QuickGOO75264
Ontology : AmiGOmolecular_function  biological_process  integral component of membrane  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  integral component of membrane  extracellular exosome  
NDEx NetworkSMIM24
Atlas of Cancer Signalling NetworkSMIM24
Wikipedia pathwaysSMIM24
Orthology - Evolution
OrthoDB284422
Phylogenetic Trees/Animal Genes : TreeFamSMIM24
HOVERGENO75264
HOGENOMO75264
Homologs : HomoloGeneSMIM24
Homology/Alignments : Family Browser (UCSC)SMIM24
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM24
dbVarSMIM24
ClinVarSMIM24
1000_GenomesSMIM24 
Exome Variant ServerSMIM24
ExAC (Exome Aggregation Consortium)SMIM24 (select the gene name)
Genetic variants : HAPMAP284422
Genomic Variants (DGV)SMIM24 [DGVbeta]
DECIPHERSMIM24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM24 
Mutations
ICGC Data PortalSMIM24 
TCGA Data PortalSMIM24 
Broad Tumor PortalSMIM24
OASIS PortalSMIM24 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM24
BioMutasearch SMIM24
DgiDB (Drug Gene Interaction Database)SMIM24
DoCM (Curated mutations)SMIM24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM24 (select a term)
intoGenSMIM24
Cancer3DSMIM24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM24
Genetic Testing Registry SMIM24
NextProtO75264 [Medical]
TSGene284422
GENETestsSMIM24
Target ValidationSMIM24
Huge Navigator SMIM24 [HugePedia]
snp3D : Map Gene to Disease284422
BioCentury BCIQSMIM24
ClinGenSMIM24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284422
Chemical/Pharm GKB GenePA165393200
Clinical trialSMIM24
Miscellaneous
canSAR (ICR)SMIM24 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM24
EVEXSMIM24
GoPubMedSMIM24
iHOPSMIM24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:31 CEST 2017

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