Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SMIM25 (small integral membrane protein 25)

Identity

Alias_namesLINC01272
long intergenic non-protein coding RNA 1272
Other alias
HGNC (Hugo) SMIM25
LocusID (NCBI) 100506115
Atlas_Id 79611
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 50267486 and ends at 50279795 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM25   50328
Cards
Entrez_Gene (NCBI)SMIM25  100506115  small integral membrane protein 25
AliasesLINC01272
GeneCards (Weizmann)SMIM25
Ensembl hg19 (Hinxton)ENSG00000224397 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224397 [Gene_View]  chr20:50267486-50279795 [Contig_View]  SMIM25 [Vega]
ICGC DataPortalENSG00000224397
TCGA cBioPortalSMIM25
AceView (NCBI)SMIM25
Genatlas (Paris)SMIM25
WikiGenes100506115
SOURCE (Princeton)SMIM25
Genetics Home Reference (NIH)SMIM25
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM25  -     chr20:50267486-50279795 +  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM25  -     20q13.13   [Description]    (hg19-Feb_2009)
EnsemblSMIM25 - 20q13.13 [CytoView hg19]  SMIM25 - 20q13.13 [CytoView hg38]
Mapping of homologs : NCBISMIM25 [Mapview hg19]  SMIM25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK307192 BI861769 BQ430993 CA307108
RefSeq transcript (Entrez)NM_001278655
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM25
Cluster EST : UnigeneHs.235484 [ NCBI ]
CGAP (NCI)Hs.235484
Alternative Splicing GalleryENSG00000224397
Gene ExpressionSMIM25 [ NCBI-GEO ]   SMIM25 [ EBI - ARRAY_EXPRESS ]   SMIM25 [ SEEK ]   SMIM25 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506115
GTEX Portal (Tissue expression)SMIM25
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM25
DMDM Disease mutations100506115
Blocks (Seattle)SMIM25
Human Protein AtlasENSG00000224397
Protein Interaction databases
FunCoupENSG00000224397
BioGRIDSMIM25
STRING (EMBL)SMIM25
ZODIACSMIM25
Ontologies - Pathways
Huge Navigator SMIM25 [HugePedia]
snp3D : Map Gene to Disease100506115
BioCentury BCIQSMIM25
ClinGenSMIM25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506115
Clinical trialSMIM25
Miscellaneous
canSAR (ICR)SMIM25 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM25
EVEXSMIM25
GoPubMedSMIM25
iHOPSMIM25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:38:32 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.