Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SMIM27 (small integral membrane protein 27)

Identity

Alias_namesC9orf133
TOPORS-AS1
chromosome 9 open reading frame 133
TOPORS antisense RNA 1 (non-protein coding)
TOPORS antisense RNA 1
Other alias
HGNC (Hugo) SMIM27
LocusID (NCBI) 100129250
Atlas_Id 78826
Location 9p21.1  [Link to chromosome band 9p21]
Location_base_pair Starts at 32551144 and ends at 32553017 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM27   31420
Cards
Entrez_Gene (NCBI)SMIM27  100129250  small integral membrane protein 27
AliasesC9orf133; TOPORS-AS1
GeneCards (Weizmann)SMIM27
Ensembl hg19 (Hinxton)ENSG00000235453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235453 [Gene_View]  chr9:32551144-32553017 [Contig_View]  SMIM27 [Vega]
ICGC DataPortalENSG00000235453
TCGA cBioPortalSMIM27
AceView (NCBI)SMIM27
Genatlas (Paris)SMIM27
WikiGenes100129250
SOURCE (Princeton)SMIM27
Genetics Home Reference (NIH)SMIM27
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM27  -     chr9:32551144-32553017 +  9p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM27  -     9p21.1   [Description]    (hg19-Feb_2009)
EnsemblSMIM27 - 9p21.1 [CytoView hg19]  SMIM27 - 9p21.1 [CytoView hg38]
Mapping of homologs : NCBISMIM27 [Mapview hg19]  SMIM27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC013655 BI916035 CB048380 DA702677 DA753662
RefSeq transcript (Entrez)NM_001349118 NM_001349119
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM27
Cluster EST : UnigeneHs.664395 [ NCBI ]
CGAP (NCI)Hs.664395
Alternative Splicing GalleryENSG00000235453
Gene ExpressionSMIM27 [ NCBI-GEO ]   SMIM27 [ EBI - ARRAY_EXPRESS ]   SMIM27 [ SEEK ]   SMIM27 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100129250
GTEX Portal (Tissue expression)SMIM27
Human Protein AtlasENSG00000235453-SMIM27 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM27
DMDM Disease mutations100129250
Blocks (Seattle)SMIM27
Human Protein Atlas [tissue]ENSG00000235453-SMIM27 [tissue]
Protein Interaction databases
FunCoupENSG00000235453
BioGRIDSMIM27
STRING (EMBL)SMIM27
ZODIACSMIM27
Ontologies - Pathways
Huge Navigator SMIM27 [HugePedia]
snp3D : Map Gene to Disease100129250
BioCentury BCIQSMIM27
ClinGenSMIM27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129250
Clinical trialSMIM27
Miscellaneous
canSAR (ICR)SMIM27 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM27
EVEXSMIM27
GoPubMedSMIM27
iHOPSMIM27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:20:40 CET 2017

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