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SMIM29 (small integral membrane protein 29)

Identity

Alias_namesC6orf1
chromosome 6 open reading frame 1
Alias_symbol (synonym)LBH
MGC57858
Other alias
HGNC (Hugo) SMIM29
LocusID (NCBI) 221491
Atlas_Id 80255
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 34246380 and ends at 34249108 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM29   1340
Cards
Entrez_Gene (NCBI)SMIM29  221491  small integral membrane protein 29
AliasesC6orf1; LBH
GeneCards (Weizmann)SMIM29
Ensembl hg19 (Hinxton)ENSG00000186577 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186577 [Gene_View]  ENSG00000186577 [Sequence]  chr6:34246380-34249108 [Contig_View]  SMIM29 [Vega]
ICGC DataPortalENSG00000186577
TCGA cBioPortalSMIM29
AceView (NCBI)SMIM29
Genatlas (Paris)SMIM29
WikiGenes221491
SOURCE (Princeton)SMIM29
Genetics Home Reference (NIH)SMIM29
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM29  -     chr6:34246380-34249108 -  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM29  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblSMIM29 - 6p21.31 [CytoView hg19]  SMIM29 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBISMIM29 [Mapview hg19]  SMIM29 [Mapview hg38]
OMIM611419   
Gene and transcription
Genbank (Entrez)AA043491 AA779779 AK290164 BC009526 BC023627
RefSeq transcript (Entrez)NM_001008703 NM_001008704 NM_001287396 NM_001287397 NM_001287398 NM_178508
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM29
Cluster EST : UnigeneHs.381300 [ NCBI ]
CGAP (NCI)Hs.381300
Alternative Splicing GalleryENSG00000186577
Gene ExpressionSMIM29 [ NCBI-GEO ]   SMIM29 [ EBI - ARRAY_EXPRESS ]   SMIM29 [ SEEK ]   SMIM29 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221491
GTEX Portal (Tissue expression)SMIM29
Human Protein AtlasENSG00000186577-SMIM29 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86T20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86T20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86T20
Splice isoforms : SwissVarQ86T20
PhosPhoSitePlusQ86T20
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM29
DMDM Disease mutations221491
Blocks (Seattle)SMIM29
SuperfamilyQ86T20
Human Protein Atlas [tissue]ENSG00000186577-SMIM29 [tissue]
Peptide AtlasQ86T20
IPIIPI00328453   IPI00945363   
Protein Interaction databases
DIP (DOE-UCLA)Q86T20
IntAct (EBI)Q86T20
FunCoupENSG00000186577
BioGRIDSMIM29
STRING (EMBL)SMIM29
ZODIACSMIM29
Ontologies - Pathways
QuickGOQ86T20
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkSMIM29
Atlas of Cancer Signalling NetworkSMIM29
Wikipedia pathwaysSMIM29
Orthology - Evolution
OrthoDB221491
GeneTree (enSembl)ENSG00000186577
Phylogenetic Trees/Animal Genes : TreeFamSMIM29
HOVERGENQ86T20
HOGENOMQ86T20
Homologs : HomoloGeneSMIM29
Homology/Alignments : Family Browser (UCSC)SMIM29
Gene fusions - Rearrangements
Fusion : QuiverSMIM29
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM29
dbVarSMIM29
ClinVarSMIM29
1000_GenomesSMIM29 
Exome Variant ServerSMIM29
ExAC (Exome Aggregation Consortium)ENSG00000186577
GNOMAD BrowserENSG00000186577
Varsome BrowserSMIM29
Genetic variants : HAPMAP221491
Genomic Variants (DGV)SMIM29 [DGVbeta]
DECIPHERSMIM29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM29 
Mutations
ICGC Data PortalSMIM29 
TCGA Data PortalSMIM29 
Broad Tumor PortalSMIM29
OASIS PortalSMIM29 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMIM29
DgiDB (Drug Gene Interaction Database)SMIM29
DoCM (Curated mutations)SMIM29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM29 (select a term)
intoGenSMIM29
Cancer3DSMIM29(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611419   
Orphanet
DisGeNETSMIM29
MedgenSMIM29
Genetic Testing Registry SMIM29
NextProtQ86T20 [Medical]
TSGene221491
GENETestsSMIM29
Target ValidationSMIM29
Huge Navigator SMIM29 [HugePedia]
snp3D : Map Gene to Disease221491
BioCentury BCIQSMIM29
ClinGenSMIM29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221491
Chemical/Pharm GKB GenePA25922
Clinical trialSMIM29
Miscellaneous
canSAR (ICR)SMIM29 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM29
EVEXSMIM29
GoPubMedSMIM29
iHOPSMIM29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:30:03 CEST 2018

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