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SMIM3 (small integral membrane protein 3)

Identity

Alias_namesC5orf62
chromosome 5 open reading frame 62
Alias_symbol (synonym)MSTP150
NID67
Other aliasMST150
HGNC (Hugo) SMIM3
LocusID (NCBI) 85027
Atlas_Id 73578
Location 5q33.1  [Link to chromosome band 5q33]
Location_base_pair Starts at 150777946 and ends at 150796736 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF746 (7q36.1) / SMIM3 (5q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM3   30248
Cards
Entrez_Gene (NCBI)SMIM3  85027  small integral membrane protein 3
AliasesC5orf62; MST150; NID67
GeneCards (Weizmann)SMIM3
Ensembl hg19 (Hinxton)ENSG00000256235 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256235 [Gene_View]  chr5:150777946-150796736 [Contig_View]  SMIM3 [Vega]
ICGC DataPortalENSG00000256235
TCGA cBioPortalSMIM3
AceView (NCBI)SMIM3
Genatlas (Paris)SMIM3
WikiGenes85027
SOURCE (Princeton)SMIM3
Genetics Home Reference (NIH)SMIM3
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM3  -     chr5:150777946-150796736 +  5q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM3  -     5q33.1   [Description]    (hg19-Feb_2009)
EnsemblSMIM3 - 5q33.1 [CytoView hg19]  SMIM3 - 5q33.1 [CytoView hg38]
Mapping of homologs : NCBISMIM3 [Mapview hg19]  SMIM3 [Mapview hg38]
OMIM608324   
Gene and transcription
Genbank (Entrez)AF313413 AK027847 AK125286 BC009719 BC101838
RefSeq transcript (Entrez)NM_032947
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM3
Cluster EST : UnigeneHs.29444 [ NCBI ]
CGAP (NCI)Hs.29444
Alternative Splicing GalleryENSG00000256235
Gene ExpressionSMIM3 [ NCBI-GEO ]   SMIM3 [ EBI - ARRAY_EXPRESS ]   SMIM3 [ SEEK ]   SMIM3 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85027
GTEX Portal (Tissue expression)SMIM3
Human Protein AtlasENSG00000256235-SMIM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZL3
Splice isoforms : SwissVarQ9BZL3
PhosPhoSitePlusQ9BZL3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM3
DMDM Disease mutations85027
Blocks (Seattle)SMIM3
SuperfamilyQ9BZL3
Human Protein Atlas [tissue]ENSG00000256235-SMIM3 [tissue]
Peptide AtlasQ9BZL3
HPRD12212
IPIIPI00001719   IPI00385080   IPI00419092   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZL3
IntAct (EBI)Q9BZL3
FunCoupENSG00000256235
BioGRIDSMIM3
STRING (EMBL)SMIM3
ZODIACSMIM3
Ontologies - Pathways
QuickGOQ9BZL3
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkSMIM3
Atlas of Cancer Signalling NetworkSMIM3
Wikipedia pathwaysSMIM3
Orthology - Evolution
OrthoDB85027
GeneTree (enSembl)ENSG00000256235
Phylogenetic Trees/Animal Genes : TreeFamSMIM3
HOVERGENQ9BZL3
HOGENOMQ9BZL3
Homologs : HomoloGeneSMIM3
Homology/Alignments : Family Browser (UCSC)SMIM3
Gene fusions - Rearrangements
Tumor Fusion PortalSMIM3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM3
dbVarSMIM3
ClinVarSMIM3
1000_GenomesSMIM3 
Exome Variant ServerSMIM3
ExAC (Exome Aggregation Consortium)ENSG00000256235
GNOMAD BrowserENSG00000256235
Genetic variants : HAPMAP85027
Genomic Variants (DGV)SMIM3 [DGVbeta]
DECIPHERSMIM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM3 
Mutations
ICGC Data PortalSMIM3 
TCGA Data PortalSMIM3 
Broad Tumor PortalSMIM3
OASIS PortalSMIM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMIM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMIM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMIM3
DgiDB (Drug Gene Interaction Database)SMIM3
DoCM (Curated mutations)SMIM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM3 (select a term)
intoGenSMIM3
Cancer3DSMIM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608324   
Orphanet
DisGeNETSMIM3
MedgenSMIM3
Genetic Testing Registry SMIM3
NextProtQ9BZL3 [Medical]
TSGene85027
GENETestsSMIM3
Target ValidationSMIM3
Huge Navigator SMIM3 [HugePedia]
snp3D : Map Gene to Disease85027
BioCentury BCIQSMIM3
ClinGenSMIM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85027
Chemical/Pharm GKB GenePA165660222
Clinical trialSMIM3
Miscellaneous
canSAR (ICR)SMIM3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM3
EVEXSMIM3
GoPubMedSMIM3
iHOPSMIM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:13:05 CET 2017

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