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SMIM30 (small integral membrane protein 30)

Identity

Alias_namesLINC00998
long intergenic non-protein coding RNA 998
Other alias
HGNC (Hugo) SMIM30
LocusID (NCBI) 401397
Atlas_Id 79010
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 113116718 and ends at 113118582 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SMIM30   48953
Cards
Entrez_Gene (NCBI)SMIM30  401397  small integral membrane protein 30
AliasesLINC00998
GeneCards (Weizmann)SMIM30
Ensembl hg19 (Hinxton)ENSG00000214194 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214194 [Gene_View]  chr7:113116718-113118582 [Contig_View]  SMIM30 [Vega]
ICGC DataPortalENSG00000214194
TCGA cBioPortalSMIM30
AceView (NCBI)SMIM30
Genatlas (Paris)SMIM30
WikiGenes401397
SOURCE (Princeton)SMIM30
Genetics Home Reference (NIH)SMIM30
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM30  -     chr7:113116718-113118582 -  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM30  -     7q31.1   [Description]    (hg19-Feb_2009)
EnsemblSMIM30 - 7q31.1 [CytoView hg19]  SMIM30 - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBISMIM30 [Mapview hg19]  SMIM30 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC065765 BC107860 BQ446959 BU630382 BX537645
RefSeq transcript (Entrez)NM_001352687 NM_001352688
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM30
Cluster EST : UnigeneHs.117929 [ NCBI ]
CGAP (NCI)Hs.117929
Alternative Splicing GalleryENSG00000214194
Gene ExpressionSMIM30 [ NCBI-GEO ]   SMIM30 [ EBI - ARRAY_EXPRESS ]   SMIM30 [ SEEK ]   SMIM30 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401397
GTEX Portal (Tissue expression)SMIM30
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM30
DMDM Disease mutations401397
Blocks (Seattle)SMIM30
Human Protein AtlasENSG00000214194
IPIIPI00844352   IPI00903087   IPI00926646   
Protein Interaction databases
FunCoupENSG00000214194
BioGRIDSMIM30
STRING (EMBL)SMIM30
ZODIACSMIM30
Ontologies - Pathways
Huge Navigator SMIM30 [HugePedia]
snp3D : Map Gene to Disease401397
BioCentury BCIQSMIM30
ClinGenSMIM30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401397
Clinical trialSMIM30
Miscellaneous
canSAR (ICR)SMIM30 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM30
EVEXSMIM30
GoPubMedSMIM30
iHOPSMIM30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:38:33 CEST 2017

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