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SMIM31 (small integral membrane protein 31)

Identity

Alias_namesLINC01207
long intergenic non-protein coding RNA 1207
Other alias
HGNC (Hugo) SMIM31
LocusID (NCBI) 100505989
Atlas_Id 79391
Location 4q32.3  [Link to chromosome band 4q32]
Location_base_pair Starts at 164754131 and ends at 164803795 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SMIM31   49638
Cards
Entrez_Gene (NCBI)SMIM31  100505989  small integral membrane protein 31
AliasesLINC01207
GeneCards (Weizmann)SMIM31
Ensembl hg19 (Hinxton)ENSG00000248771 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248771 [Gene_View]  ENSG00000248771 [Sequence]  chr4:164754131-164803795 [Contig_View]  SMIM31 [Vega]
ICGC DataPortalENSG00000248771
TCGA cBioPortalSMIM31
AceView (NCBI)SMIM31
Genatlas (Paris)SMIM31
WikiGenes100505989
SOURCE (Princeton)SMIM31
Genetics Home Reference (NIH)SMIM31
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM31  -     chr4:164754131-164803795 +  4q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM31  -     4q32.3   [Description]    (hg19-Feb_2009)
EnsemblSMIM31 - 4q32.3 [CytoView hg19]  SMIM31 - 4q32.3 [CytoView hg38]
Mapping of homologs : NCBISMIM31 [Mapview hg19]  SMIM31 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095255 BC062791 DA454469
RefSeq transcript (Entrez)NM_001352885
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM31
Cluster EST : UnigeneHs.328236 [ NCBI ]
CGAP (NCI)Hs.328236
Alternative Splicing GalleryENSG00000248771
Gene ExpressionSMIM31 [ NCBI-GEO ]   SMIM31 [ EBI - ARRAY_EXPRESS ]   SMIM31 [ SEEK ]   SMIM31 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505989
GTEX Portal (Tissue expression)SMIM31
Human Protein AtlasENSG00000248771-SMIM31 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM31
DMDM Disease mutations100505989
Blocks (Seattle)SMIM31
Human Protein Atlas [tissue]ENSG00000248771-SMIM31 [tissue]
Protein Interaction databases
FunCoupENSG00000248771
BioGRIDSMIM31
STRING (EMBL)SMIM31
ZODIACSMIM31
Ontologies - Pathways
Huge Navigator SMIM31 [HugePedia]
snp3D : Map Gene to Disease100505989
BioCentury BCIQSMIM31
ClinGenSMIM31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505989
Clinical trialSMIM31
Miscellaneous
canSAR (ICR)SMIM31 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM31
EVEXSMIM31
GoPubMedSMIM31
iHOPSMIM31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:30:04 CEST 2018

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