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SMIM35 (small integral membrane protein 35)

Identity

Alias (NCBI)TMPRSS4-AS1
HGNC (Hugo) SMIM35
HGNC Previous nameTMPRSS4-AS1
HGNC Previous nameTMPRSS4 antisense RNA 1 (non-protein coding)
 TMPRSS4 antisense RNA 1
LocusID (NCBI) 100526771
Atlas_Id 79522
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 118013748 and ends at 118086793 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SMIM35   44179
Cards
Entrez_Gene (NCBI)SMIM35  100526771  small integral membrane protein 35
AliasesTMPRSS4-AS1
GeneCards (Weizmann)SMIM35
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr11:118013748-118086793 [Contig_View]  SMIM35 [Vega]
TCGA cBioPortalSMIM35
AceView (NCBI)SMIM35
Genatlas (Paris)SMIM35
WikiGenes100526771
SOURCE (Princeton)SMIM35
Genetics Home Reference (NIH)SMIM35
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM35  -     chr11:118013748-118086793 -  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM35  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathSMIM35 - 11q23.3 [CytoView hg19]  SMIM35 - 11q23.3 [CytoView hg38]
genome Data Viewer NCBISMIM35 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB231754 AB231755 AB231756 AB231757 AB231758
RefSeq transcript (Entrez)NM_001354434
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM35
Gene ExpressionSMIM35 [ NCBI-GEO ]   SMIM35 [ EBI - ARRAY_EXPRESS ]   SMIM35 [ SEEK ]   SMIM35 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM35 [ Firebrowse - Broad ]
GenevisibleExpression of SMIM35 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100526771
GTEX Portal (Tissue expression)SMIM35
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM35
DMDM Disease mutations100526771
Blocks (Seattle)SMIM35
Protein Interaction databases
BioGRIDSMIM35
STRING (EMBL)SMIM35
ZODIACSMIM35
Ontologies - Pathways
Huge Navigator SMIM35 [HugePedia]
snp3D : Map Gene to Disease100526771
BioCentury BCIQSMIM35
ClinGenSMIM35
Clinical trials, drugs, therapy
Protein Interactions : CTD100526771
Clinical trialSMIM35
Miscellaneous
canSAR (ICR)SMIM35 (select the gene name)
HarmonizomeSMIM35
DataMed IndexSMIM35
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM35
EVEXSMIM35
GoPubMedSMIM35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:28:44 CEST 2020

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