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SMIM4 (small integral membrane protein 4)

Identity

Alias_namesC3orf78
chromosome 3 open reading frame 78
Other alias
HGNC (Hugo) SMIM4
LocusID (NCBI) 440957
Atlas_Id 73579
Location 3p21.1  [Link to chromosome band 3p21]
Location_base_pair Starts at 52536605 and ends at 52540570 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM4   37257
Cards
Entrez_Gene (NCBI)SMIM4  440957  small integral membrane protein 4
AliasesC3orf78
GeneCards (Weizmann)SMIM4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:52536605-52540570 [Contig_View]  SMIM4 [Vega]
TCGA cBioPortalSMIM4
AceView (NCBI)SMIM4
Genatlas (Paris)SMIM4
WikiGenes440957
SOURCE (Princeton)SMIM4
Genetics Home Reference (NIH)SMIM4
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM4  -     chr3:52536605-52540570 +  3p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM4  -     3p21.1   [Description]    (hg19-Feb_2009)
EnsemblSMIM4 - 3p21.1 [CytoView hg19]  SMIM4 - 3p21.1 [CytoView hg38]
Mapping of homologs : NCBISMIM4 [Mapview hg19]  SMIM4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095910 BC017996 BG031013 BM674004
RefSeq transcript (Entrez)NM_001124767
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM4
Cluster EST : UnigeneHs.660577 [ NCBI ]
CGAP (NCI)Hs.660577
Gene ExpressionSMIM4 [ NCBI-GEO ]   SMIM4 [ EBI - ARRAY_EXPRESS ]   SMIM4 [ SEEK ]   SMIM4 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440957
GTEX Portal (Tissue expression)SMIM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVI0
Splice isoforms : SwissVarQ8WVI0
PhosPhoSitePlusQ8WVI0
Domains : Interpro (EBI)UPF0640   
Domain families : Pfam (Sanger)UPF0640 (PF15114)   
Domain families : Pfam (NCBI)pfam15114   
Conserved Domain (NCBI)SMIM4
DMDM Disease mutations440957
Blocks (Seattle)SMIM4
SuperfamilyQ8WVI0
Peptide AtlasQ8WVI0
IPIIPI00890795   IPI00793536   IPI00455575   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVI0
IntAct (EBI)Q8WVI0
BioGRIDSMIM4
STRING (EMBL)SMIM4
ZODIACSMIM4
Ontologies - Pathways
QuickGOQ8WVI0
Ontology : AmiGOmitochondrion  integral component of membrane  
Ontology : EGO-EBImitochondrion  integral component of membrane  
NDEx NetworkSMIM4
Atlas of Cancer Signalling NetworkSMIM4
Wikipedia pathwaysSMIM4
Orthology - Evolution
OrthoDB440957
Phylogenetic Trees/Animal Genes : TreeFamSMIM4
HOVERGENQ8WVI0
HOGENOMQ8WVI0
Homologs : HomoloGeneSMIM4
Homology/Alignments : Family Browser (UCSC)SMIM4
Gene fusions - Rearrangements
Fusion: Tumor Portal SMIM4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM4
dbVarSMIM4
ClinVarSMIM4
1000_GenomesSMIM4 
Exome Variant ServerSMIM4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP440957
Genomic Variants (DGV)SMIM4 [DGVbeta]
DECIPHERSMIM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM4 
Mutations
ICGC Data PortalSMIM4 
TCGA Data PortalSMIM4 
Broad Tumor PortalSMIM4
OASIS PortalSMIM4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMIM4
DgiDB (Drug Gene Interaction Database)SMIM4
DoCM (Curated mutations)SMIM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM4 (select a term)
intoGenSMIM4
Cancer3DSMIM4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM4
Genetic Testing Registry SMIM4
NextProtQ8WVI0 [Medical]
TSGene440957
GENETestsSMIM4
Target ValidationSMIM4
Huge Navigator SMIM4 [HugePedia]
snp3D : Map Gene to Disease440957
BioCentury BCIQSMIM4
ClinGenSMIM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440957
Chemical/Pharm GKB GenePA165696922
Clinical trialSMIM4
Miscellaneous
canSAR (ICR)SMIM4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM4
EVEXSMIM4
GoPubMedSMIM4
iHOPSMIM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:28:10 CET 2017

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