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SMIM5 (small integral membrane protein 5)

Identity

Alias_namesC17orf109
chromosome 17 open reading frame 109
Other aliasPP12104
HGNC (Hugo) SMIM5
LocusID (NCBI) 643008
Atlas_Id 73580
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 73629514 and ends at 73637486 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM5   40030
Cards
Entrez_Gene (NCBI)SMIM5  643008  small integral membrane protein 5
AliasesC17orf109; PP12104
GeneCards (Weizmann)SMIM5
Ensembl hg19 (Hinxton)ENSG00000204323 [Gene_View]  chr17:73629514-73637486 [Contig_View]  SMIM5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204323 [Gene_View]  chr17:73629514-73637486 [Contig_View]  SMIM5 [Vega]
ICGC DataPortalENSG00000204323
TCGA cBioPortalSMIM5
AceView (NCBI)SMIM5
Genatlas (Paris)SMIM5
WikiGenes643008
SOURCE (Princeton)SMIM5
Genetics Home Reference (NIH)SMIM5
Genomic and cartography
GoldenPath hg19 (UCSC)SMIM5  -     chr17:73629514-73637486 +  17q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SMIM5  -     17q25.1   [Description]    (hg38-Dec_2013)
EnsemblSMIM5 - 17q25.1 [CytoView hg19]  SMIM5 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBISMIM5 [Mapview hg19]  SMIM5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF370408 AK055768 AL832643 BC027861 BC146918
RefSeq transcript (Entrez)NM_001162995
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_029617 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)SMIM5
Cluster EST : UnigeneHs.528605 [ NCBI ]
CGAP (NCI)Hs.528605
Alternative Splicing GalleryENSG00000204323
Gene ExpressionSMIM5 [ NCBI-GEO ]   SMIM5 [ EBI - ARRAY_EXPRESS ]   SMIM5 [ SEEK ]   SMIM5 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643008
GTEX Portal (Tissue expression)SMIM5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ71RC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ71RC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ71RC9
Splice isoforms : SwissVarQ71RC9
PhosPhoSitePlusQ71RC9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM5
DMDM Disease mutations643008
Blocks (Seattle)SMIM5
SuperfamilyQ71RC9
Human Protein AtlasENSG00000204323
Peptide AtlasQ71RC9
IPIIPI00435933   IPI01018667   
Protein Interaction databases
DIP (DOE-UCLA)Q71RC9
IntAct (EBI)Q71RC9
FunCoupENSG00000204323
BioGRIDSMIM5
STRING (EMBL)SMIM5
ZODIACSMIM5
Ontologies - Pathways
QuickGOQ71RC9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM5
Atlas of Cancer Signalling NetworkSMIM5
Wikipedia pathwaysSMIM5
Orthology - Evolution
OrthoDB643008
GeneTree (enSembl)ENSG00000204323
Phylogenetic Trees/Animal Genes : TreeFamSMIM5
HOVERGENQ71RC9
HOGENOMQ71RC9
Homologs : HomoloGeneSMIM5
Homology/Alignments : Family Browser (UCSC)SMIM5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM5
dbVarSMIM5
ClinVarSMIM5
1000_GenomesSMIM5 
Exome Variant ServerSMIM5
ExAC (Exome Aggregation Consortium)SMIM5 (select the gene name)
Genetic variants : HAPMAP643008
Genomic Variants (DGV)SMIM5 [DGVbeta]
DECIPHER (Syndromes)17:73629514-73637486  ENSG00000204323
CONAN: Copy Number AnalysisSMIM5 
Mutations
ICGC Data PortalSMIM5 
TCGA Data PortalSMIM5 
Broad Tumor PortalSMIM5
OASIS PortalSMIM5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMIM5
DgiDB (Drug Gene Interaction Database)SMIM5
DoCM (Curated mutations)SMIM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM5 (select a term)
intoGenSMIM5
Cancer3DSMIM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM5
Genetic Testing Registry SMIM5
NextProtQ71RC9 [Medical]
TSGene643008
GENETestsSMIM5
Huge Navigator SMIM5 [HugePedia]
snp3D : Map Gene to Disease643008
BioCentury BCIQSMIM5
ClinGenSMIM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643008
Clinical trialSMIM5
Miscellaneous
canSAR (ICR)SMIM5 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM5
EVEXSMIM5
GoPubMedSMIM5
iHOPSMIM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:16 CET 2017

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