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SMIM6 (small integral membrane protein 6)

Identity

Alias_namesC17orf110
chromosome 17 open reading frame 110
Other alias
HGNC (Hugo) SMIM6
LocusID (NCBI) 100130933
Atlas_Id 73581
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75646566 and ends at 75647977 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM6   40032
Cards
Entrez_Gene (NCBI)SMIM6  100130933  small integral membrane protein 6
AliasesC17orf110
GeneCards (Weizmann)SMIM6
Ensembl hg19 (Hinxton)ENSG00000259120 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259120 [Gene_View]  chr17:75646566-75647977 [Contig_View]  SMIM6 [Vega]
ICGC DataPortalENSG00000259120
TCGA cBioPortalSMIM6
AceView (NCBI)SMIM6
Genatlas (Paris)SMIM6
WikiGenes100130933
SOURCE (Princeton)SMIM6
Genetics Home Reference (NIH)SMIM6
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM6  -     chr17:75646566-75647977 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM6  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblSMIM6 - 17q25.1 [CytoView hg19]  SMIM6 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBISMIM6 [Mapview hg19]  SMIM6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI167865 AK131023 AL041162 BC062771
RefSeq transcript (Entrez)NM_001162997
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM6
Cluster EST : UnigeneHs.662541 [ NCBI ]
CGAP (NCI)Hs.662541
Alternative Splicing GalleryENSG00000259120
Gene ExpressionSMIM6 [ NCBI-GEO ]   SMIM6 [ EBI - ARRAY_EXPRESS ]   SMIM6 [ SEEK ]   SMIM6 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130933
GTEX Portal (Tissue expression)SMIM6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DI80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DI80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DI80
Splice isoforms : SwissVarP0DI80
PhosPhoSitePlusP0DI80
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM6
DMDM Disease mutations100130933
Blocks (Seattle)SMIM6
SuperfamilyP0DI80
Human Protein AtlasENSG00000259120
Peptide AtlasP0DI80
IPIIPI00935809   
Protein Interaction databases
DIP (DOE-UCLA)P0DI80
IntAct (EBI)P0DI80
FunCoupENSG00000259120
BioGRIDSMIM6
STRING (EMBL)SMIM6
ZODIACSMIM6
Ontologies - Pathways
QuickGOP0DI80
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM6
Atlas of Cancer Signalling NetworkSMIM6
Wikipedia pathwaysSMIM6
Orthology - Evolution
OrthoDB100130933
GeneTree (enSembl)ENSG00000259120
Phylogenetic Trees/Animal Genes : TreeFamSMIM6
HOVERGENP0DI80
HOGENOMP0DI80
Homologs : HomoloGeneSMIM6
Homology/Alignments : Family Browser (UCSC)SMIM6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM6
dbVarSMIM6
ClinVarSMIM6
1000_GenomesSMIM6 
Exome Variant ServerSMIM6
ExAC (Exome Aggregation Consortium)SMIM6 (select the gene name)
Genetic variants : HAPMAP100130933
Genomic Variants (DGV)SMIM6 [DGVbeta]
DECIPHERSMIM6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM6 
Mutations
ICGC Data PortalSMIM6 
TCGA Data PortalSMIM6 
Broad Tumor PortalSMIM6
OASIS PortalSMIM6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMIM6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMIM6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMIM6
DgiDB (Drug Gene Interaction Database)SMIM6
DoCM (Curated mutations)SMIM6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM6 (select a term)
intoGenSMIM6
Cancer3DSMIM6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM6
Genetic Testing Registry SMIM6
NextProtP0DI80 [Medical]
TSGene100130933
GENETestsSMIM6
Target ValidationSMIM6
Huge Navigator SMIM6 [HugePedia]
snp3D : Map Gene to Disease100130933
BioCentury BCIQSMIM6
ClinGenSMIM6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130933
Chemical/Pharm GKB GenePA166049054
Clinical trialSMIM6
Miscellaneous
canSAR (ICR)SMIM6 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM6
EVEXSMIM6
GoPubMedSMIM6
iHOPSMIM6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:48 CEST 2017

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