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SMIM8 (small integral membrane protein 8)

Identity

Alias_namesC6orf162
chromosome 6 open reading frame 162
Alias_symbol (synonym)DKFZP586E1923
dJ102H19.2
Other alias
HGNC (Hugo) SMIM8
LocusID (NCBI) 57150
Atlas_Id 73583
Location 6q15  [Link to chromosome band 6q15]
Location_base_pair Starts at 87322588 and ends at 87342328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TAB2 (6q25.1) / SMIM8 (6q15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q15;q25) TAB2/SMIM8


External links

Nomenclature
HGNC (Hugo)SMIM8   21401
Cards
Entrez_Gene (NCBI)SMIM8  57150  small integral membrane protein 8
AliasesC6orf162; dJ102H19.2
GeneCards (Weizmann)SMIM8
Ensembl hg19 (Hinxton)ENSG00000111850 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111850 [Gene_View]  ENSG00000111850 [Sequence]  chr6:87322588-87342328 [Contig_View]  SMIM8 [Vega]
ICGC DataPortalENSG00000111850
TCGA cBioPortalSMIM8
AceView (NCBI)SMIM8
Genatlas (Paris)SMIM8
WikiGenes57150
SOURCE (Princeton)SMIM8
Genetics Home Reference (NIH)SMIM8
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM8  -     chr6:87322588-87342328 +  6q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM8  -     6q15   [Description]    (hg19-Feb_2009)
EnsemblSMIM8 - 6q15 [CytoView hg19]  SMIM8 - 6q15 [CytoView hg38]
Mapping of homologs : NCBISMIM8 [Mapview hg19]  SMIM8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF311339 AI239454 AI681117 AJ420558 AK311963
RefSeq transcript (Entrez)NM_001042493 NM_001287445 NM_020425
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM8
Cluster EST : UnigeneHs.70769 [ NCBI ]
CGAP (NCI)Hs.70769
Alternative Splicing GalleryENSG00000111850
Gene ExpressionSMIM8 [ NCBI-GEO ]   SMIM8 [ EBI - ARRAY_EXPRESS ]   SMIM8 [ SEEK ]   SMIM8 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57150
GTEX Portal (Tissue expression)SMIM8
Human Protein AtlasENSG00000111850-SMIM8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KF7
Splice isoforms : SwissVarQ96KF7
PhosPhoSitePlusQ96KF7
Domains : Interpro (EBI)UPF0708   
Domain families : Pfam (Sanger)DUF4500 (PF14937)   
Domain families : Pfam (NCBI)pfam14937   
Conserved Domain (NCBI)SMIM8
DMDM Disease mutations57150
Blocks (Seattle)SMIM8
SuperfamilyQ96KF7
Human Protein Atlas [tissue]ENSG00000111850-SMIM8 [tissue]
Peptide AtlasQ96KF7
HPRD12862
IPIIPI00007009   
Protein Interaction databases
DIP (DOE-UCLA)Q96KF7
IntAct (EBI)Q96KF7
FunCoupENSG00000111850
BioGRIDSMIM8
STRING (EMBL)SMIM8
ZODIACSMIM8
Ontologies - Pathways
QuickGOQ96KF7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM8
Atlas of Cancer Signalling NetworkSMIM8
Wikipedia pathwaysSMIM8
Orthology - Evolution
OrthoDB57150
GeneTree (enSembl)ENSG00000111850
Phylogenetic Trees/Animal Genes : TreeFamSMIM8
HOVERGENQ96KF7
HOGENOMQ96KF7
Homologs : HomoloGeneSMIM8
Homology/Alignments : Family Browser (UCSC)SMIM8
Gene fusions - Rearrangements
Fusion : QuiverSMIM8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM8
dbVarSMIM8
ClinVarSMIM8
1000_GenomesSMIM8 
Exome Variant ServerSMIM8
ExAC (Exome Aggregation Consortium)ENSG00000111850
GNOMAD BrowserENSG00000111850
Varsome BrowserSMIM8
Genetic variants : HAPMAP57150
Genomic Variants (DGV)SMIM8 [DGVbeta]
DECIPHERSMIM8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM8 
Mutations
ICGC Data PortalSMIM8 
TCGA Data PortalSMIM8 
Broad Tumor PortalSMIM8
OASIS PortalSMIM8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM8
BioMutasearch SMIM8
DgiDB (Drug Gene Interaction Database)SMIM8
DoCM (Curated mutations)SMIM8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM8 (select a term)
intoGenSMIM8
Cancer3DSMIM8(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSMIM8
MedgenSMIM8
Genetic Testing Registry SMIM8
NextProtQ96KF7 [Medical]
TSGene57150
GENETestsSMIM8
Target ValidationSMIM8
Huge Navigator SMIM8 [HugePedia]
snp3D : Map Gene to Disease57150
BioCentury BCIQSMIM8
ClinGenSMIM8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57150
Chemical/Pharm GKB GenePA134961667
Clinical trialSMIM8
Miscellaneous
canSAR (ICR)SMIM8 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM8
EVEXSMIM8
GoPubMedSMIM8
iHOPSMIM8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 14:30:07 CEST 2018

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