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SMIM9 (small integral membrane protein 9)

Identity

Alias_namesCXorf68
chromosome X open reading frame 68
Other alias
HGNC (Hugo) SMIM9
LocusID (NCBI) 100132963
Atlas_Id 73584
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154051623 and ends at 154062937 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM9   41915
Cards
Entrez_Gene (NCBI)SMIM9  100132963  small integral membrane protein 9
AliasesCXorf68
GeneCards (Weizmann)SMIM9
Ensembl hg19 (Hinxton)ENSG00000203870 [Gene_View]  chrX:154051623-154062937 [Contig_View]  SMIM9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000203870 [Gene_View]  chrX:154051623-154062937 [Contig_View]  SMIM9 [Vega]
ICGC DataPortalENSG00000203870
TCGA cBioPortalSMIM9
AceView (NCBI)SMIM9
Genatlas (Paris)SMIM9
WikiGenes100132963
SOURCE (Princeton)SMIM9
Genetics Home Reference (NIH)SMIM9
Genomic and cartography
GoldenPath hg19 (UCSC)SMIM9  -     chrX:154051623-154062937 -  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SMIM9  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblSMIM9 - Xq28 [CytoView hg19]  SMIM9 - Xq28 [CytoView hg38]
Mapping of homologs : NCBISMIM9 [Mapview hg19]  SMIM9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW072401 BG196890 BX092805 DA855214
RefSeq transcript (Entrez)NM_001162936
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_033065 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)SMIM9
Cluster EST : UnigeneHs.220762 [ NCBI ]
CGAP (NCI)Hs.220762
Alternative Splicing GalleryENSG00000203870
Gene ExpressionSMIM9 [ NCBI-GEO ]   SMIM9 [ EBI - ARRAY_EXPRESS ]   SMIM9 [ SEEK ]   SMIM9 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132963
GTEX Portal (Tissue expression)SMIM9
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGZ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGZ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGZ8
Splice isoforms : SwissVarA6NGZ8
PhosPhoSitePlusA6NGZ8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM9
DMDM Disease mutations100132963
Blocks (Seattle)SMIM9
SuperfamilyA6NGZ8
Human Protein AtlasENSG00000203870
Peptide AtlasA6NGZ8
IPIIPI00089199   
Protein Interaction databases
DIP (DOE-UCLA)A6NGZ8
IntAct (EBI)A6NGZ8
FunCoupENSG00000203870
BioGRIDSMIM9
STRING (EMBL)SMIM9
ZODIACSMIM9
Ontologies - Pathways
QuickGOA6NGZ8
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkSMIM9
Atlas of Cancer Signalling NetworkSMIM9
Wikipedia pathwaysSMIM9
Orthology - Evolution
OrthoDB100132963
GeneTree (enSembl)ENSG00000203870
Phylogenetic Trees/Animal Genes : TreeFamSMIM9
HOVERGENA6NGZ8
HOGENOMA6NGZ8
Homologs : HomoloGeneSMIM9
Homology/Alignments : Family Browser (UCSC)SMIM9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM9
dbVarSMIM9
ClinVarSMIM9
1000_GenomesSMIM9 
Exome Variant ServerSMIM9
ExAC (Exome Aggregation Consortium)SMIM9 (select the gene name)
Genetic variants : HAPMAP100132963
Genomic Variants (DGV)SMIM9 [DGVbeta]
DECIPHER (Syndromes)X:154051623-154062937  ENSG00000203870
CONAN: Copy Number AnalysisSMIM9 
Mutations
ICGC Data PortalSMIM9 
TCGA Data PortalSMIM9 
Broad Tumor PortalSMIM9
OASIS PortalSMIM9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM9
BioMutasearch SMIM9
DgiDB (Drug Gene Interaction Database)SMIM9
DoCM (Curated mutations)SMIM9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM9 (select a term)
intoGenSMIM9
Cancer3DSMIM9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM9
Genetic Testing Registry SMIM9
NextProtA6NGZ8 [Medical]
TSGene100132963
GENETestsSMIM9
Huge Navigator SMIM9 [HugePedia]
snp3D : Map Gene to Disease100132963
BioCentury BCIQSMIM9
ClinGenSMIM9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132963
Clinical trialSMIM9
Miscellaneous
canSAR (ICR)SMIM9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM9
EVEXSMIM9
GoPubMedSMIM9
iHOPSMIM9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:17 CET 2017

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