Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SMKR1 (small lysine rich protein 1)

Identity

Other alias-
HGNC (Hugo) SMKR1
LocusID (NCBI) 100287482
Atlas_Id 73585
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 129502479 and ends at 129512932 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMKR1   43561
Cards
Entrez_Gene (NCBI)SMKR1  100287482  small lysine rich protein 1
Aliases
GeneCards (Weizmann)SMKR1
Ensembl hg19 (Hinxton)ENSG00000240204 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240204 [Gene_View]  chr7:129502479-129512932 [Contig_View]  SMKR1 [Vega]
ICGC DataPortalENSG00000240204
TCGA cBioPortalSMKR1
AceView (NCBI)SMKR1
Genatlas (Paris)SMKR1
WikiGenes100287482
SOURCE (Princeton)SMKR1
Genetics Home Reference (NIH)SMKR1
Genomic and cartography
GoldenPath hg38 (UCSC)SMKR1  -     chr7:129502479-129512932 +  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMKR1  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblSMKR1 - 7q32.1 [CytoView hg19]  SMKR1 - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBISMKR1 [Mapview hg19]  SMKR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086124 BC035417 BC050400
RefSeq transcript (Entrez)NM_001195243
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMKR1
Cluster EST : UnigeneHs.178144 [ NCBI ]
CGAP (NCI)Hs.178144
Alternative Splicing GalleryENSG00000240204
Gene ExpressionSMKR1 [ NCBI-GEO ]   SMKR1 [ EBI - ARRAY_EXPRESS ]   SMKR1 [ SEEK ]   SMKR1 [ MEM ]
Gene Expression Viewer (FireBrowse)SMKR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287482
GTEX Portal (Tissue expression)SMKR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BMG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BMG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BMG3
Splice isoforms : SwissVarH3BMG3
PhosPhoSitePlusH3BMG3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMKR1
DMDM Disease mutations100287482
Blocks (Seattle)SMKR1
SuperfamilyH3BMG3
Human Protein AtlasENSG00000240204
Peptide AtlasH3BMG3
IPIIPI00921240   
Protein Interaction databases
DIP (DOE-UCLA)H3BMG3
IntAct (EBI)H3BMG3
FunCoupENSG00000240204
BioGRIDSMKR1
STRING (EMBL)SMKR1
ZODIACSMKR1
Ontologies - Pathways
QuickGOH3BMG3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSMKR1
Atlas of Cancer Signalling NetworkSMKR1
Wikipedia pathwaysSMKR1
Orthology - Evolution
OrthoDB100287482
GeneTree (enSembl)ENSG00000240204
Phylogenetic Trees/Animal Genes : TreeFamSMKR1
HOVERGENH3BMG3
HOGENOMH3BMG3
Homologs : HomoloGeneSMKR1
Homology/Alignments : Family Browser (UCSC)SMKR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMKR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMKR1
dbVarSMKR1
ClinVarSMKR1
1000_GenomesSMKR1 
Exome Variant ServerSMKR1
ExAC (Exome Aggregation Consortium)SMKR1 (select the gene name)
Genetic variants : HAPMAP100287482
Genomic Variants (DGV)SMKR1 [DGVbeta]
DECIPHERSMKR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMKR1 
Mutations
ICGC Data PortalSMKR1 
TCGA Data PortalSMKR1 
Broad Tumor PortalSMKR1
OASIS PortalSMKR1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMKR1
BioMutasearch SMKR1
DgiDB (Drug Gene Interaction Database)SMKR1
DoCM (Curated mutations)SMKR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMKR1 (select a term)
intoGenSMKR1
Cancer3DSMKR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMKR1
Genetic Testing Registry SMKR1
NextProtH3BMG3 [Medical]
TSGene100287482
GENETestsSMKR1
Target ValidationSMKR1
Huge Navigator SMKR1 [HugePedia]
snp3D : Map Gene to Disease100287482
BioCentury BCIQSMKR1
ClinGenSMKR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287482
Chemical/Pharm GKB GenePA166049099
Clinical trialSMKR1
Miscellaneous
canSAR (ICR)SMKR1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMKR1
EVEXSMKR1
GoPubMedSMKR1
iHOPSMKR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:41:48 CEST 2017

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