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SMLR1 (small leucine rich protein 1)

Identity

Other alias-
HGNC (Hugo) SMLR1
LocusID (NCBI) 100507203
Atlas_Id 73586
Location 6q23.1  [Link to chromosome band 6q23]
Location_base_pair Starts at 130827405 and ends at 130837136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMLR1   44670
Cards
Entrez_Gene (NCBI)SMLR1  100507203  small leucine rich protein 1
Aliases
GeneCards (Weizmann)SMLR1
Ensembl hg19 (Hinxton)ENSG00000256162 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256162 [Gene_View]  ENSG00000256162 [Sequence]  chr6:130827405-130837136 [Contig_View]  SMLR1 [Vega]
ICGC DataPortalENSG00000256162
TCGA cBioPortalSMLR1
AceView (NCBI)SMLR1
Genatlas (Paris)SMLR1
WikiGenes100507203
SOURCE (Princeton)SMLR1
Genetics Home Reference (NIH)SMLR1
Genomic and cartography
GoldenPath hg38 (UCSC)SMLR1  -     chr6:130827405-130837136 +  6q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMLR1  -     6q23.1   [Description]    (hg19-Feb_2009)
EnsemblSMLR1 - 6q23.1 [CytoView hg19]  SMLR1 - 6q23.1 [CytoView hg38]
Mapping of homologs : NCBISMLR1 [Mapview hg19]  SMLR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI247685 AK091900 BC101422 BC101423 BC101424
RefSeq transcript (Entrez)NM_001195597
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMLR1
Cluster EST : UnigeneHs.388715 [ NCBI ]
CGAP (NCI)Hs.388715
Alternative Splicing GalleryENSG00000256162
Gene ExpressionSMLR1 [ NCBI-GEO ]   SMLR1 [ EBI - ARRAY_EXPRESS ]   SMLR1 [ SEEK ]   SMLR1 [ MEM ]
Gene Expression Viewer (FireBrowse)SMLR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507203
GTEX Portal (Tissue expression)SMLR1
Human Protein AtlasENSG00000256162-SMLR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BR10   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BR10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BR10
Splice isoforms : SwissVarH3BR10
PhosPhoSitePlusH3BR10
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMLR1
DMDM Disease mutations100507203
Blocks (Seattle)SMLR1
SuperfamilyH3BR10
Human Protein Atlas [tissue]ENSG00000256162-SMLR1 [tissue]
Peptide AtlasH3BR10
Protein Interaction databases
DIP (DOE-UCLA)H3BR10
IntAct (EBI)H3BR10
FunCoupENSG00000256162
BioGRIDSMLR1
STRING (EMBL)SMLR1
ZODIACSMLR1
Ontologies - Pathways
QuickGOH3BR10
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkSMLR1
Atlas of Cancer Signalling NetworkSMLR1
Wikipedia pathwaysSMLR1
Orthology - Evolution
OrthoDB100507203
GeneTree (enSembl)ENSG00000256162
Phylogenetic Trees/Animal Genes : TreeFamSMLR1
HOVERGENH3BR10
HOGENOMH3BR10
Homologs : HomoloGeneSMLR1
Homology/Alignments : Family Browser (UCSC)SMLR1
Gene fusions - Rearrangements
Fusion : QuiverSMLR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMLR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMLR1
dbVarSMLR1
ClinVarSMLR1
1000_GenomesSMLR1 
Exome Variant ServerSMLR1
ExAC (Exome Aggregation Consortium)ENSG00000256162
GNOMAD BrowserENSG00000256162
Varsome BrowserSMLR1
Genetic variants : HAPMAP100507203
Genomic Variants (DGV)SMLR1 [DGVbeta]
DECIPHERSMLR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMLR1 
Mutations
ICGC Data PortalSMLR1 
TCGA Data PortalSMLR1 
Broad Tumor PortalSMLR1
OASIS PortalSMLR1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMLR1
BioMutasearch SMLR1
DgiDB (Drug Gene Interaction Database)SMLR1
DoCM (Curated mutations)SMLR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMLR1 (select a term)
intoGenSMLR1
Cancer3DSMLR1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSMLR1
MedgenSMLR1
Genetic Testing Registry SMLR1
NextProtH3BR10 [Medical]
TSGene100507203
GENETestsSMLR1
Target ValidationSMLR1
Huge Navigator SMLR1 [HugePedia]
snp3D : Map Gene to Disease100507203
BioCentury BCIQSMLR1
ClinGenSMLR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507203
Chemical/Pharm GKB GenePA166049154
Clinical trialSMLR1
Miscellaneous
canSAR (ICR)SMLR1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMLR1
EVEXSMLR1
GoPubMedSMLR1
iHOPSMLR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:30:07 CEST 2018

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