Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SMOC1 (SPARC related modular calcium binding 1)

Identity

Other aliasOAS
HGNC (Hugo) SMOC1
LocusID (NCBI) 64093
Atlas_Id 52374
Location 14q24.2  [Link to chromosome band 14q24]
Location_base_pair Starts at 70346114 and ends at 70499083 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SMOC1 (14q24.2) / GALNT2 (1q42.13)SMOC1 (14q24.2) / JAK1 (1p31.3)SMOC1 (14q24.2) / SBF2 (11p15.4)
SMOC1 (14q24.2) / SMOC1 (14q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMOC1   20318
Cards
Entrez_Gene (NCBI)SMOC1  64093  SPARC related modular calcium binding 1
AliasesOAS
GeneCards (Weizmann)SMOC1
Ensembl hg19 (Hinxton)ENSG00000198732 [Gene_View]  chr14:70346114-70499083 [Contig_View]  SMOC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198732 [Gene_View]  chr14:70346114-70499083 [Contig_View]  SMOC1 [Vega]
ICGC DataPortalENSG00000198732
TCGA cBioPortalSMOC1
AceView (NCBI)SMOC1
Genatlas (Paris)SMOC1
WikiGenes64093
SOURCE (Princeton)SMOC1
Genetics Home Reference (NIH)SMOC1
Genomic and cartography
GoldenPath hg19 (UCSC)SMOC1  -     chr14:70346114-70499083 +  14q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SMOC1  -     14q24.2   [Description]    (hg38-Dec_2013)
EnsemblSMOC1 - 14q24.2 [CytoView hg19]  SMOC1 - 14q24.2 [CytoView hg38]
Mapping of homologs : NCBISMOC1 [Mapview hg19]  SMOC1 [Mapview hg38]
OMIM206920   608488   
Gene and transcription
Genbank (Entrez)AJ249900 AK098441 AK289988 AK313063 BC008608
RefSeq transcript (Entrez)NM_001034852 NM_022137
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_028217 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)SMOC1
Cluster EST : UnigeneHs.497349 [ NCBI ]
CGAP (NCI)Hs.497349
Alternative Splicing GalleryENSG00000198732
Gene ExpressionSMOC1 [ NCBI-GEO ]   SMOC1 [ EBI - ARRAY_EXPRESS ]   SMOC1 [ SEEK ]   SMOC1 [ MEM ]
Gene Expression Viewer (FireBrowse)SMOC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64093
GTEX Portal (Tissue expression)SMOC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4F8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4F8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4F8
Splice isoforms : SwissVarQ9H4F8
PhosPhoSitePlusQ9H4F8
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    KAZAL_2 (PS51465)    THYROGLOBULIN_1_1 (PS00484)    THYROGLOBULIN_1_2 (PS51162)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    Kazal_dom    SPARC/Testican_Ca-bd-dom    Thyroglobulin_1   
Domain families : Pfam (Sanger)Kazal_2 (PF07648)    SPARC_Ca_bdg (PF10591)    Thyroglobulin_1 (PF00086)   
Domain families : Pfam (NCBI)pfam07648    pfam10591    pfam00086   
Domain families : Smart (EMBL)KAZAL (SM00280)  TY (SM00211)  
Conserved Domain (NCBI)SMOC1
DMDM Disease mutations64093
Blocks (Seattle)SMOC1
SuperfamilyQ9H4F8
Human Protein AtlasENSG00000198732
Peptide AtlasQ9H4F8
HPRD12244
IPIIPI00301812   IPI00412898   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4F8
IntAct (EBI)Q9H4F8
FunCoupENSG00000198732
BioGRIDSMOC1
STRING (EMBL)SMOC1
ZODIACSMOC1
Ontologies - Pathways
QuickGOQ9H4F8
Ontology : AmiGOeye development  calcium ion binding  protein binding  basement membrane  signal transduction  cell differentiation  regulation of osteoblast differentiation  limb development  
Ontology : EGO-EBIeye development  calcium ion binding  protein binding  basement membrane  signal transduction  cell differentiation  regulation of osteoblast differentiation  limb development  
NDEx NetworkSMOC1
Atlas of Cancer Signalling NetworkSMOC1
Wikipedia pathwaysSMOC1
Orthology - Evolution
OrthoDB64093
GeneTree (enSembl)ENSG00000198732
Phylogenetic Trees/Animal Genes : TreeFamSMOC1
HOVERGENQ9H4F8
HOGENOMQ9H4F8
Homologs : HomoloGeneSMOC1
Homology/Alignments : Family Browser (UCSC)SMOC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMOC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMOC1
dbVarSMOC1
ClinVarSMOC1
1000_GenomesSMOC1 
Exome Variant ServerSMOC1
ExAC (Exome Aggregation Consortium)SMOC1 (select the gene name)
Genetic variants : HAPMAP64093
Genomic Variants (DGV)SMOC1 [DGVbeta]
DECIPHER (Syndromes)14:70346114-70499083  ENSG00000198732
CONAN: Copy Number AnalysisSMOC1 
Mutations
ICGC Data PortalSMOC1 
TCGA Data PortalSMOC1 
Broad Tumor PortalSMOC1
OASIS PortalSMOC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMOC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMOC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMOC1
DgiDB (Drug Gene Interaction Database)SMOC1
DoCM (Curated mutations)SMOC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMOC1 (select a term)
intoGenSMOC1
Cancer3DSMOC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM206920    608488   
Orphanet1388   
MedgenSMOC1
Genetic Testing Registry SMOC1
NextProtQ9H4F8 [Medical]
TSGene64093
GENETestsSMOC1
Huge Navigator SMOC1 [HugePedia]
snp3D : Map Gene to Disease64093
BioCentury BCIQSMOC1
ClinGenSMOC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64093
Chemical/Pharm GKB GenePA134942329
Clinical trialSMOC1
Miscellaneous
canSAR (ICR)SMOC1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMOC1
EVEXSMOC1
GoPubMedSMOC1
iHOPSMOC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:10 CEST 2017

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