Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SMOX (spermine oxidase)

Identity

Other namesC20orf16
PAO
PAO-1
PAOH1
SMO
HGNC (Hugo) SMOX
LocusID (NCBI) 54498
Location 20p13
Location_base_pair Starts at 4129426 and ends at 4168394 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SMOX   15862
Entrez_Gene (NCBI)SMOX  54498  spermine oxidase
Cards
GeneCards (Weizmann)SMOX
Ensembl (Hinxton)ENSG00000088826 [Gene_View]  chr20:4129426-4168394 [Contig_View]  SMOX [Vega]
AceView (NCBI)SMOX
Genatlas (Paris)SMOX
SOURCE (Stanford)NM_001270691 NM_175839 NM_175840 NM_175841 NM_175842
Genomic and cartography
GoldenPath (UCSC)SMOX  -  20p13   chr20:4129426-4168394 +  20p13   [Description]    (hg19-Feb_2009)
EnsemblSMOX - 20p13 [CytoView]
Mapping of homologs : NCBISMOX [Mapview]
Gene and transcription
Genbank (Entrez)AF519179 AK000753 AK025938 AK127286 AK293485
RefSeq transcript (SRS)NM_001270691 NM_175839 NM_175840 NM_175841 NM_175842
RefSeq transcript (Entrez)NM_001270691 NM_175839 NM_175840 NM_175841 NM_175842
RefSeq genomic (SRS)AC_000152 NC_000020 NC_018931 NT_011387 NW_001838652 NW_004078100
RefSeq genomic (Entrez)AC_000152 NC_000020 NC_018931 NT_011387 NW_001838652 NW_004078100
Consensus coding sequences : CCDS (NCBI)SMOX
Cluster EST : UnigeneHs.433337 [ SRS ] Hs.433337 [ NCBI ]
CGAP (NCI)Hs.433337
Alternative Splicing : Fast-db (Paris)GSHG0018539
Alternative Splicing GalleryENSG00000088826
Gene ExpressionSMOX [ NCBI-GEO ]   SMOX [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWM0 (SRS) Q9NWM0 (Uniprot)
NextProtQ9NWM0
With graphics : InterProQ9NWM0
Splice isoforms : SwissVarQ9NWM0(Swissvar)
Domains : Interpro (SRS)Amino_oxidase   
Domains : Interpro (EBI)Amino_oxidase   
Related proteins : CluSTrQ9NWM0
Domain families : Pfam (SRS)Amino_oxidase (PF01593)   
Domain families : Pfam (Sanger)Amino_oxidase (PF01593)   
Domain families : Pfam (NCBI)pfam01593   
DMDM54498
Blocks (Seattle)Q9NWM0
Human Protein AtlasENSG00000088826
HPRD11587
IPIIPI00424178   IPI00424179   IPI00424181   IPI00424182   IPI00424183   IPI00971012   IPI00910769   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWM0
IntAct (EBI)Q9NWM0
FunCoupENSG00000088826
REACTOMESMOX
Protein Interaction Database54498
BioGRIDSMOX
InParanoidQ9NWM0
Interologous Interaction database Q9NWM0
IntegromeDBSMOX
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SMOX
SNP (GeneSNP Utah)SMOX
SNP : HGBaseSMOX
Genetic variants : HAPMAPSMOX
Somatic Mutations in Cancer : COSMICSMOX 
CONAN: Copy Number AnalysisSMOX 
Mutations and Diseases : HGMDSMOX
OMIM
GENETests
Disease Genetic AssociationSMOX
Huge Navigator SMOX [HugePedia]  SMOX [HugeCancerGEM]
Genomic VariantsSMOX  SMOX [DGVbeta]
snp3D : Map Gene to Disease54498
General knowledge
Homologs : HomoloGeneSMOX
Homology/Alignments : Family Browser (UCSC)SMOX
Phylogenetic Trees/Animal Genes : TreeFamSMOX
Catalytic activity : Enzyme1.5.3.16 [ Enzyme-Expasy ]   1.5.3.16 [ Enzyme-SRS ]   1.5.3.16 [ IntEnz-EBI ]   1.5.3.16 [ BRENDA ]   1.5.3.16 [ KEGG ]   
Chemical/Protein Interactions : CTD54498
Chemical/Pharm GKB GenePA25701
Clinical trialSMOX
Cancer Resource (Charite)ENSG00000088826
Ontology : AmiGOnucleus  nucleus  cytoplasm  cytosol  polyamine metabolic process  polyamine biosynthetic process  polyamine catabolic process  xenobiotic metabolic process  cellular nitrogen compound metabolic process  small molecule metabolic process  spermine catabolic process  spermine catabolic process  polyamine oxidase activity  norspermine:oxygen oxidoreductase activity  N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity  spermine:oxygen oxidoreductase (spermidine-forming) activity  
Ontology : EGO-EBInucleus  nucleus  cytoplasm  cytosol  polyamine metabolic process  polyamine biosynthetic process  polyamine catabolic process  xenobiotic metabolic process  cellular nitrogen compound metabolic process  small molecule metabolic process  spermine catabolic process  spermine catabolic process  polyamine oxidase activity  norspermine:oxygen oxidoreductase activity  N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity  spermine:oxygen oxidoreductase (spermidine-forming) activity  
Other databases
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
PubGeneSMOX
iHOPSMOX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:41:08 CEST 2013
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