Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SMOX (spermine oxidase)

Identity

Alias_namesC20orf16
chromosome 20 open reading frame 16
Alias_symbol (synonym)FLJ20746
dJ779E11.1
PAO
PAOh1
MGC1010
SMO
Other aliasPAO-1
PAO1
PAOH
PAOH1
HGNC (Hugo) SMOX
LocusID (NCBI) 54498
Atlas_Id 46474
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 4148779 and ends at 4187747 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SMOX (20p13) / EIF3D (22q12.3)SMOX (20p13) / SMOX (20p13)SMOX (20p13) / URM1 (9q34.11)
SMOX 20p13 / EIF3D 22q12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMOX   15862
Cards
Entrez_Gene (NCBI)SMOX  54498  spermine oxidase
AliasesC20orf16; PAO; PAO-1; PAO1; 
PAOH; PAOH1; SMO
GeneCards (Weizmann)SMOX
Ensembl hg19 (Hinxton)ENSG00000088826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000088826 [Gene_View]  chr20:4148779-4187747 [Contig_View]  SMOX [Vega]
ICGC DataPortalENSG00000088826
TCGA cBioPortalSMOX
AceView (NCBI)SMOX
Genatlas (Paris)SMOX
WikiGenes54498
SOURCE (Princeton)SMOX
Genetics Home Reference (NIH)SMOX
Genomic and cartography
GoldenPath hg38 (UCSC)SMOX  -     chr20:4148779-4187747 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMOX  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblSMOX - 20p13 [CytoView hg19]  SMOX - 20p13 [CytoView hg38]
Mapping of homologs : NCBISMOX [Mapview hg19]  SMOX [Mapview hg38]
OMIM615854   
Gene and transcription
Genbank (Entrez)AF519179 AK000753 AK025938 AK127286 AK293485
RefSeq transcript (Entrez)NM_001270691 NM_175839 NM_175840 NM_175841 NM_175842
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMOX
Cluster EST : UnigeneHs.433337 [ NCBI ]
CGAP (NCI)Hs.433337
Alternative Splicing GalleryENSG00000088826
Gene ExpressionSMOX [ NCBI-GEO ]   SMOX [ EBI - ARRAY_EXPRESS ]   SMOX [ SEEK ]   SMOX [ MEM ]
Gene Expression Viewer (FireBrowse)SMOX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54498
GTEX Portal (Tissue expression)SMOX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWM0
Splice isoforms : SwissVarQ9NWM0
Catalytic activity : Enzyme1.5.3.16 [ Enzyme-Expasy ]   1.5.3.161.5.3.16 [ IntEnz-EBI ]   1.5.3.16 [ BRENDA ]   1.5.3.16 [ KEGG ]   
PhosPhoSitePlusQ9NWM0
Domains : Interpro (EBI)Amino_oxidase    FAD/NAD-binding_dom   
Domain families : Pfam (Sanger)Amino_oxidase (PF01593)   
Domain families : Pfam (NCBI)pfam01593   
Conserved Domain (NCBI)SMOX
DMDM Disease mutations54498
Blocks (Seattle)SMOX
SuperfamilyQ9NWM0
Human Protein AtlasENSG00000088826
Peptide AtlasQ9NWM0
HPRD11587
IPIIPI00424178   IPI00424179   IPI00424181   IPI00424182   IPI00424183   IPI00971012   IPI00910769   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWM0
IntAct (EBI)Q9NWM0
FunCoupENSG00000088826
BioGRIDSMOX
STRING (EMBL)SMOX
ZODIACSMOX
Ontologies - Pathways
QuickGOQ9NWM0
Ontology : AmiGOnucleoplasm  cytosol  polyamine biosynthetic process  polyamine catabolic process  nuclear membrane  intracellular membrane-bounded organelle  spermine catabolic process  polyamine oxidase activity  norspermine:oxygen oxidoreductase activity  N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity  spermine:oxygen oxidoreductase (spermidine-forming) activity  oxidation-reduction process  
Ontology : EGO-EBInucleoplasm  cytosol  polyamine biosynthetic process  polyamine catabolic process  nuclear membrane  intracellular membrane-bounded organelle  spermine catabolic process  polyamine oxidase activity  norspermine:oxygen oxidoreductase activity  N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity  spermine:oxygen oxidoreductase (spermidine-forming) activity  oxidation-reduction process  
Pathways : KEGGArginine and proline metabolism    beta-Alanine metabolism   
NDEx NetworkSMOX
Atlas of Cancer Signalling NetworkSMOX
Wikipedia pathwaysSMOX
Orthology - Evolution
OrthoDB54498
GeneTree (enSembl)ENSG00000088826
Phylogenetic Trees/Animal Genes : TreeFamSMOX
HOVERGENQ9NWM0
HOGENOMQ9NWM0
Homologs : HomoloGeneSMOX
Homology/Alignments : Family Browser (UCSC)SMOX
Gene fusions - Rearrangements
Fusion : MitelmanSMOX/EIF3D [20p13/22q12.3]  
Fusion: TCGASMOX 20p13 EIF3D 22q12.3 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMOX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMOX
dbVarSMOX
ClinVarSMOX
1000_GenomesSMOX 
Exome Variant ServerSMOX
ExAC (Exome Aggregation Consortium)SMOX (select the gene name)
Genetic variants : HAPMAP54498
Genomic Variants (DGV)SMOX [DGVbeta]
DECIPHERSMOX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMOX 
Mutations
ICGC Data PortalSMOX 
TCGA Data PortalSMOX 
Broad Tumor PortalSMOX
OASIS PortalSMOX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMOX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMOX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMOX
DgiDB (Drug Gene Interaction Database)SMOX
DoCM (Curated mutations)SMOX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMOX (select a term)
intoGenSMOX
Cancer3DSMOX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615854   
Orphanet
MedgenSMOX
Genetic Testing Registry SMOX
NextProtQ9NWM0 [Medical]
TSGene54498
GENETestsSMOX
Target ValidationSMOX
Huge Navigator SMOX [HugePedia]
snp3D : Map Gene to Disease54498
BioCentury BCIQSMOX
ClinGenSMOX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54498
Chemical/Pharm GKB GenePA25701
Clinical trialSMOX
Miscellaneous
canSAR (ICR)SMOX (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMOX
EVEXSMOX
GoPubMedSMOX
iHOPSMOX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 17:15:09 CEST 2017

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