Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SMPD4 (sphingomyelin phosphodiesterase 4)

Identity

Alias (NCBI)NEDMABA
NEDMEBA
NET13
NSMASE-3
NSMASE3
SKNY
HGNC (Hugo) SMPD4
HGNC Alias symbFLJ20297
FLJ20756
nSMase-3
KIAA1418
NSMASE3
NET13
HGNC Alias nameneutral sphingomyelinase-3
HGNC Previous namesphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)
LocusID (NCBI) 55627
Atlas_Id 50381
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 130151392 and ends at 130181757 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SMPD4 (2q21.1) / MDH1 (2p15)SMPD4 (2q21.1) / MTCH1 (6p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SMPD4   32949
Cards
Entrez_Gene (NCBI)SMPD4    sphingomyelin phosphodiesterase 4
AliasesNEDMABA; NEDMEBA; NET13; NSMASE-3; 
NSMASE3; SKNY
GeneCards (Weizmann)SMPD4
Ensembl hg19 (Hinxton)ENSG00000136699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136699 [Gene_View]  ENSG00000136699 [Sequence]  chr2:130151392-130181757 [Contig_View]  SMPD4 [Vega]
ICGC DataPortalENSG00000136699
TCGA cBioPortalSMPD4
AceView (NCBI)SMPD4
Genatlas (Paris)SMPD4
SOURCE (Princeton)SMPD4
Genetics Home Reference (NIH)SMPD4
Genomic and cartography
GoldenPath hg38 (UCSC)SMPD4  -     chr2:130151392-130181757 -  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMPD4  -     2q21.1   [Description]    (hg19-Feb_2009)
GoldenPathSMPD4 - 2q21.1 [CytoView hg19]  SMPD4 - 2q21.1 [CytoView hg38]
ImmunoBaseENSG00000136699
Genome Data Viewer NCBISMPD4 [Mapview hg19]  
OMIM610457   618622   
Gene and transcription
Genbank (Entrez)AA232420 AB037839 AF052134 AI393912 AK000304
RefSeq transcript (Entrez)NM_001171083 NM_001171084 NM_017751 NM_017951
Consensus coding sequences : CCDS (NCBI)SMPD4
Gene ExpressionSMPD4 [ NCBI-GEO ]   SMPD4 [ EBI - ARRAY_EXPRESS ]   SMPD4 [ SEEK ]   SMPD4 [ MEM ]
Gene Expression Viewer (FireBrowse)SMPD4 [ Firebrowse - Broad ]
GenevisibleExpression of SMPD4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55627
GTEX Portal (Tissue expression)SMPD4
Human Protein AtlasENSG00000136699-SMPD4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMPD4
Human Protein Atlas [tissue]ENSG00000136699-SMPD4 [tissue]
HPRD13374
Protein Interaction databases
BioGRIDSMPD4
STRING (EMBL)SMPD4
ZODIACSMPD4
Ontologies - Pathways
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSMPD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:32:16 CEST 2021

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