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SMPD4P1 (sphingomyelin phosphodiesterase 4 pseudogene 1)

Identity

Other alias-
HGNC (Hugo) SMPD4P1
LocusID (NCBI) 645280
Atlas_Id 78796
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 20616230 and ends at 20656914 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SMPD4P1   39673
Cards
Entrez_Gene (NCBI)SMPD4P1  645280  sphingomyelin phosphodiesterase 4 pseudogene 1
Aliases
GeneCards (Weizmann)SMPD4P1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:20616230-20656914 [Contig_View]  SMPD4P1 [Vega]
TCGA cBioPortalSMPD4P1
AceView (NCBI)SMPD4P1
Genatlas (Paris)SMPD4P1
WikiGenes645280
SOURCE (Princeton)SMPD4P1
Genetics Home Reference (NIH)SMPD4P1
Genomic and cartography
GoldenPath hg38 (UCSC)SMPD4P1  -     chr22:20616230-20656914 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMPD4P1  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblSMPD4P1 - 22q11.21 [CytoView hg19]  SMPD4P1 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBISMPD4P1 [Mapview hg19]  SMPD4P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC035867
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMPD4P1
Cluster EST : UnigeneHs.678839 [ NCBI ]
CGAP (NCI)Hs.678839
Gene ExpressionSMPD4P1 [ NCBI-GEO ]   SMPD4P1 [ EBI - ARRAY_EXPRESS ]   SMPD4P1 [ SEEK ]   SMPD4P1 [ MEM ]
Gene Expression Viewer (FireBrowse)SMPD4P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)645280
GTEX Portal (Tissue expression)SMPD4P1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMPD4P1
DMDM Disease mutations645280
Blocks (Seattle)SMPD4P1
Protein Interaction databases
BioGRIDSMPD4P1
STRING (EMBL)SMPD4P1
ZODIACSMPD4P1
Ontologies - Pathways
Huge Navigator SMPD4P1 [HugePedia]
snp3D : Map Gene to Disease645280
BioCentury BCIQSMPD4P1
ClinGenSMPD4P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645280
Clinical trialSMPD4P1
Miscellaneous
canSAR (ICR)SMPD4P1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMPD4P1
EVEXSMPD4P1
GoPubMedSMPD4P1
iHOPSMPD4P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:35 CEST 2017

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