Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SMR3A (submaxillary gland androgen regulated protein 3A)

Identity

Alias_namesPROL5
proline rich 5 (salivary)
submaxillary gland androgen regulated protein 3 homolog A (mouse)
Alias_symbol (synonym)PBI
PRL5
Other aliasP-B1
HGNC (Hugo) SMR3A
LocusID (NCBI) 26952
Atlas_Id 55833
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 70360776 and ends at 70367106 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMR3A   19216
Cards
Entrez_Gene (NCBI)SMR3A  26952  submaxillary gland androgen regulated protein 3A
AliasesP-B1; PBI; PRL5; PROL5
GeneCards (Weizmann)SMR3A
Ensembl hg19 (Hinxton)ENSG00000109208 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109208 [Gene_View]  chr4:70360776-70367106 [Contig_View]  SMR3A [Vega]
ICGC DataPortalENSG00000109208
TCGA cBioPortalSMR3A
AceView (NCBI)SMR3A
Genatlas (Paris)SMR3A
WikiGenes26952
SOURCE (Princeton)SMR3A
Genetics Home Reference (NIH)SMR3A
Genomic and cartography
GoldenPath hg38 (UCSC)SMR3A  -     chr4:70360776-70367106 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMR3A  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblSMR3A - 4q13.3 [CytoView hg19]  SMR3A - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBISMR3A [Mapview hg19]  SMR3A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK312075 BC140927 CA946421 CD722466 CD722957
RefSeq transcript (Entrez)NM_012390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMR3A
Cluster EST : UnigeneHs.701334 [ NCBI ]
CGAP (NCI)Hs.701334
Alternative Splicing GalleryENSG00000109208
Gene ExpressionSMR3A [ NCBI-GEO ]   SMR3A [ EBI - ARRAY_EXPRESS ]   SMR3A [ SEEK ]   SMR3A [ MEM ]
Gene Expression Viewer (FireBrowse)SMR3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26952
GTEX Portal (Tissue expression)SMR3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99954   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99954  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99954
Splice isoforms : SwissVarQ99954
PhosPhoSitePlusQ99954
Domains : Interpro (EBI)SMR-like   
Domain families : Pfam (Sanger)PROL5-SMR (PF15621)   
Domain families : Pfam (NCBI)pfam15621   
Conserved Domain (NCBI)SMR3A
DMDM Disease mutations26952
Blocks (Seattle)SMR3A
SuperfamilyQ99954
Human Protein AtlasENSG00000109208
Peptide AtlasQ99954
HPRD18077
IPIIPI00018230   
Protein Interaction databases
DIP (DOE-UCLA)Q99954
IntAct (EBI)Q99954
FunCoupENSG00000109208
BioGRIDSMR3A
STRING (EMBL)SMR3A
ZODIACSMR3A
Ontologies - Pathways
QuickGOQ99954
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkSMR3A
Atlas of Cancer Signalling NetworkSMR3A
Wikipedia pathwaysSMR3A
Orthology - Evolution
OrthoDB26952
GeneTree (enSembl)ENSG00000109208
Phylogenetic Trees/Animal Genes : TreeFamSMR3A
HOVERGENQ99954
HOGENOMQ99954
Homologs : HomoloGeneSMR3A
Homology/Alignments : Family Browser (UCSC)SMR3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMR3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMR3A
dbVarSMR3A
ClinVarSMR3A
1000_GenomesSMR3A 
Exome Variant ServerSMR3A
ExAC (Exome Aggregation Consortium)SMR3A (select the gene name)
Genetic variants : HAPMAP26952
Genomic Variants (DGV)SMR3A [DGVbeta]
DECIPHERSMR3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMR3A 
Mutations
ICGC Data PortalSMR3A 
TCGA Data PortalSMR3A 
Broad Tumor PortalSMR3A
OASIS PortalSMR3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMR3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMR3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMR3A
DgiDB (Drug Gene Interaction Database)SMR3A
DoCM (Curated mutations)SMR3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMR3A (select a term)
intoGenSMR3A
Cancer3DSMR3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMR3A
Genetic Testing Registry SMR3A
NextProtQ99954 [Medical]
TSGene26952
GENETestsSMR3A
Target ValidationSMR3A
Huge Navigator SMR3A [HugePedia]
snp3D : Map Gene to Disease26952
BioCentury BCIQSMR3A
ClinGenSMR3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26952
Chemical/Pharm GKB GenePA38824
Clinical trialSMR3A
Miscellaneous
canSAR (ICR)SMR3A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMR3A
EVEXSMR3A
GoPubMedSMR3A
iHOPSMR3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:07:59 CEST 2017

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