Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SMR3B (submaxillary gland androgen regulated protein 3B)

Identity

Alias_namesPROL3
proline rich 3
submaxillary gland androgen regulated protein 3 homolog B (mouse)
Alias_symbol (synonym)P-B
PRL3
Other aliasPBII
SMR1B
HGNC (Hugo) SMR3B
LocusID (NCBI) 10879
Atlas_Id 73593
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 70383078 and ends at 70390244 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PIKFYVE (2q34) / SMR3B (4q13.3)SMR3B (4q13.3) / MAGI1 (3p14.1)SMR3B (4q13.3) / MYH9 (22q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMR3B   17326
Cards
Entrez_Gene (NCBI)SMR3B  10879  submaxillary gland androgen regulated protein 3B
AliasesP-B; PBII; PRL3; PROL3; 
SMR1B
GeneCards (Weizmann)SMR3B
Ensembl hg19 (Hinxton)ENSG00000171201 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171201 [Gene_View]  chr4:70383078-70390244 [Contig_View]  SMR3B [Vega]
ICGC DataPortalENSG00000171201
TCGA cBioPortalSMR3B
AceView (NCBI)SMR3B
Genatlas (Paris)SMR3B
WikiGenes10879
SOURCE (Princeton)SMR3B
Genetics Home Reference (NIH)SMR3B
Genomic and cartography
GoldenPath hg38 (UCSC)SMR3B  -     chr4:70383078-70390244 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMR3B  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblSMR3B - 4q13.3 [CytoView hg19]  SMR3B - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBISMR3B [Mapview hg19]  SMR3B [Mapview hg38]
OMIM611593   
Gene and transcription
Genbank (Entrez)BC015327 BC094707 BC144529 BX487896 CB958582
RefSeq transcript (Entrez)NM_006685
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMR3B
Cluster EST : UnigeneHs.650650 [ NCBI ]
CGAP (NCI)Hs.650650
Alternative Splicing GalleryENSG00000171201
Gene ExpressionSMR3B [ NCBI-GEO ]   SMR3B [ EBI - ARRAY_EXPRESS ]   SMR3B [ SEEK ]   SMR3B [ MEM ]
Gene Expression Viewer (FireBrowse)SMR3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10879
GTEX Portal (Tissue expression)SMR3B
Human Protein AtlasENSG00000171201-SMR3B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02814   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP02814  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP02814
Splice isoforms : SwissVarP02814
PhosPhoSitePlusP02814
Domains : Interpro (EBI)SMR-like   
Domain families : Pfam (Sanger)PROL5-SMR (PF15621)   
Domain families : Pfam (NCBI)pfam15621   
Conserved Domain (NCBI)SMR3B
DMDM Disease mutations10879
Blocks (Seattle)SMR3B
SuperfamilyP02814
Human Protein Atlas [tissue]ENSG00000171201-SMR3B [tissue]
Peptide AtlasP02814
HPRD18078
IPIIPI00023011   IPI00604636   
Protein Interaction databases
DIP (DOE-UCLA)P02814
IntAct (EBI)P02814
FunCoupENSG00000171201
BioGRIDSMR3B
STRING (EMBL)SMR3B
ZODIACSMR3B
Ontologies - Pathways
QuickGOP02814
Ontology : AmiGOmolecular_function  protein binding  extracellular space  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  protein binding  extracellular space  biological_process  extracellular exosome  
NDEx NetworkSMR3B
Atlas of Cancer Signalling NetworkSMR3B
Wikipedia pathwaysSMR3B
Orthology - Evolution
OrthoDB10879
GeneTree (enSembl)ENSG00000171201
Phylogenetic Trees/Animal Genes : TreeFamSMR3B
HOVERGENP02814
HOGENOMP02814
Homologs : HomoloGeneSMR3B
Homology/Alignments : Family Browser (UCSC)SMR3B
Gene fusions - Rearrangements
Fusion: Tumor Portal SMR3B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMR3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMR3B
dbVarSMR3B
ClinVarSMR3B
1000_GenomesSMR3B 
Exome Variant ServerSMR3B
ExAC (Exome Aggregation Consortium)ENSG00000171201
GNOMAD BrowserENSG00000171201
Genetic variants : HAPMAP10879
Genomic Variants (DGV)SMR3B [DGVbeta]
DECIPHERSMR3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMR3B 
Mutations
ICGC Data PortalSMR3B 
TCGA Data PortalSMR3B 
Broad Tumor PortalSMR3B
OASIS PortalSMR3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMR3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMR3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMR3B
DgiDB (Drug Gene Interaction Database)SMR3B
DoCM (Curated mutations)SMR3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMR3B (select a term)
intoGenSMR3B
Cancer3DSMR3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611593   
Orphanet
MedgenSMR3B
Genetic Testing Registry SMR3B
NextProtP02814 [Medical]
TSGene10879
GENETestsSMR3B
Target ValidationSMR3B
Huge Navigator SMR3B [HugePedia]
snp3D : Map Gene to Disease10879
BioCentury BCIQSMR3B
ClinGenSMR3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10879
Chemical/Pharm GKB GenePA33805
Clinical trialSMR3B
Miscellaneous
canSAR (ICR)SMR3B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMR3B
EVEXSMR3B
GoPubMedSMR3B
iHOPSMR3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:28:13 CET 2017

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