Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SMTNL1 (smoothelin-like 1)

Identity

Other namesCHASM
HGNC (Hugo) SMTNL1
LocusID (NCBI) 219537
Location 11q12.1
Location_base_pair Starts at 57310114 and ends at 57317747 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SMTNL1   32394
Entrez_Gene (NCBI)SMTNL1  219537  smoothelin-like 1
Cards
GeneCards (Weizmann)SMTNL1
Ensembl (Hinxton)ENSG00000214872 [Gene_View]  chr11:57310114-57317747 [Contig_View]  SMTNL1 [Vega]
AceView (NCBI)SMTNL1
Genatlas (Paris)SMTNL1
SOURCE (Stanford)NM_001105565
Genomic and cartography
GoldenPath (UCSC)SMTNL1  -  11q12.1   chr11:57310114-57317747 +  11q12.1   [Description]    (hg19-Feb_2009)
EnsemblSMTNL1 - 11q12.1 [CytoView]
Mapping of homologs : NCBISMTNL1 [Mapview]
OMIM613664   
Gene and transcription
Genbank (Entrez)BC172381
RefSeq transcript (SRS)NM_001105565
RefSeq transcript (Entrez)NM_001105565
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838023 NW_004078072
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838023 NW_004078072
Consensus coding sequences : CCDS (NCBI)SMTNL1
Cluster EST : UnigeneHs.68756 [ SRS ] Hs.68756 [ NCBI ]
CGAP (NCI)Hs.68756
Alternative Splicing : Fast-db (Paris)GSHG0004844
Alternative Splicing GalleryENSG00000214872
Gene ExpressionSMTNL1 [ NCBI-GEO ]   SMTNL1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MU46 (SRS) A8MU46 (Uniprot)
NextProtA8MU46
With graphics : InterProA8MU46
Splice isoforms : SwissVarA8MU46(Swissvar)
Domaine pattern : Prosite (SRS)CH (PS50021)   
Domaine pattern : Prosite (Expaxy)CH (PS50021)   
Domains : Interpro (SRS)CH-domain   
Domains : Interpro (EBI)CH-domain   
Related proteins : CluSTrA8MU46
Domain families : Pfam (SRS)CH (PF00307)   
Domain families : Pfam (Sanger)CH (PF00307)   
Domain families : Pfam (NCBI)pfam00307   
Domain families : Smart (EMBL)CH (SM00033)  
DMDM219537
Blocks (Seattle)A8MU46
Human Protein AtlasENSG00000214872
IPIIPI00377167   IPI00940640   
Protein Interaction databases
DIP (DOE-UCLA)A8MU46
IntAct (EBI)A8MU46
FunCoupENSG00000214872
REACTOMESMTNL1
Protein Interaction Database219537
BioGRIDSMTNL1
InParanoidA8MU46
Interologous Interaction database A8MU46
IntegromeDBSMTNL1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SMTNL1
SNP (GeneSNP Utah)SMTNL1
SNP : HGBaseSMTNL1
Genetic variants : HAPMAPSMTNL1
Somatic Mutations in Cancer : COSMICSMTNL1 
CONAN: Copy Number AnalysisSMTNL1 
Mutations and Diseases : HGMDSMTNL1
OMIM613664   
GENETests613664   
Disease Genetic AssociationSMTNL1
Huge Navigator SMTNL1 [HugePedia]  SMTNL1 [HugeCancerGEM]
Genomic VariantsSMTNL1  SMTNL1 [DGVbeta]
snp3D : Map Gene to Disease219537
General knowledge
Homologs : HomoloGeneSMTNL1
Homology/Alignments : Family Browser (UCSC)SMTNL1
Phylogenetic Trees/Animal Genes : TreeFamSMTNL1
Chemical/Protein Interactions : CTD219537
Chemical/Pharm GKB GenePA143485618
Clinical trialSMTNL1
Cancer Resource (Charite)ENSG00000214872
Ontology : AmiGOcalmodulin binding  nucleus  cytoplasm  M band  I band  contractile fiber  positive regulation of vasoconstriction  negative regulation of vasodilation  
Ontology : EGO-EBIcalmodulin binding  nucleus  cytoplasm  M band  I band  contractile fiber  positive regulation of vasoconstriction  negative regulation of vasodilation  
Other databases
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
PubGeneSMTNL1
iHOPSMTNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:27:56 CEST 2013
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