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SMTNL2 (smoothelin-like 2)

Identity

Alias_namessmoothelin-like 2
Alias_symbol (synonym)FLJ42461
Other alias-
HGNC (Hugo) SMTNL2
LocusID (NCBI) 342527
Atlas_Id 73594
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4487834 and ends at 4511614 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMTNL2   24764
Cards
Entrez_Gene (NCBI)SMTNL2  342527  smoothelin-like 2
Aliases
GeneCards (Weizmann)SMTNL2
Ensembl hg19 (Hinxton)ENSG00000188176 [Gene_View]  chr17:4487834-4511614 [Contig_View]  SMTNL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188176 [Gene_View]  chr17:4487834-4511614 [Contig_View]  SMTNL2 [Vega]
ICGC DataPortalENSG00000188176
TCGA cBioPortalSMTNL2
AceView (NCBI)SMTNL2
Genatlas (Paris)SMTNL2
WikiGenes342527
SOURCE (Princeton)SMTNL2
Genetics Home Reference (NIH)SMTNL2
Genomic and cartography
GoldenPath hg19 (UCSC)SMTNL2  -     chr17:4487834-4511614 +  17p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SMTNL2  -     17p13.2   [Description]    (hg38-Dec_2013)
EnsemblSMTNL2 - 17p13.2 [CytoView hg19]  SMTNL2 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBISMTNL2 [Mapview hg19]  SMTNL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124452 BC105050 BC110859 BC112177 DA822419
RefSeq transcript (Entrez)NM_001114974 NM_198501
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)SMTNL2
Cluster EST : UnigeneHs.441709 [ NCBI ]
CGAP (NCI)Hs.441709
Alternative Splicing GalleryENSG00000188176
Gene ExpressionSMTNL2 [ NCBI-GEO ]   SMTNL2 [ EBI - ARRAY_EXPRESS ]   SMTNL2 [ SEEK ]   SMTNL2 [ MEM ]
Gene Expression Viewer (FireBrowse)SMTNL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342527
GTEX Portal (Tissue expression)SMTNL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TAL5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TAL5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TAL5
Splice isoforms : SwissVarQ2TAL5
PhosPhoSitePlusQ2TAL5
Domaine pattern : Prosite (Expaxy)CH (PS50021)   
Domains : Interpro (EBI)CH-domain   
Domain families : Pfam (Sanger)CH (PF00307)   
Domain families : Pfam (NCBI)pfam00307   
Domain families : Smart (EMBL)CH (SM00033)  
Conserved Domain (NCBI)SMTNL2
DMDM Disease mutations342527
Blocks (Seattle)SMTNL2
SuperfamilyQ2TAL5
Human Protein AtlasENSG00000188176
Peptide AtlasQ2TAL5
HPRD13463
IPIIPI00394847   IPI00784051   
Protein Interaction databases
DIP (DOE-UCLA)Q2TAL5
IntAct (EBI)Q2TAL5
FunCoupENSG00000188176
BioGRIDSMTNL2
STRING (EMBL)SMTNL2
ZODIACSMTNL2
Ontologies - Pathways
QuickGOQ2TAL5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSMTNL2
Atlas of Cancer Signalling NetworkSMTNL2
Wikipedia pathwaysSMTNL2
Orthology - Evolution
OrthoDB342527
GeneTree (enSembl)ENSG00000188176
Phylogenetic Trees/Animal Genes : TreeFamSMTNL2
HOVERGENQ2TAL5
HOGENOMQ2TAL5
Homologs : HomoloGeneSMTNL2
Homology/Alignments : Family Browser (UCSC)SMTNL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMTNL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMTNL2
dbVarSMTNL2
ClinVarSMTNL2
1000_GenomesSMTNL2 
Exome Variant ServerSMTNL2
ExAC (Exome Aggregation Consortium)SMTNL2 (select the gene name)
Genetic variants : HAPMAP342527
Genomic Variants (DGV)SMTNL2 [DGVbeta]
DECIPHER (Syndromes)17:4487834-4511614  ENSG00000188176
CONAN: Copy Number AnalysisSMTNL2 
Mutations
ICGC Data PortalSMTNL2 
TCGA Data PortalSMTNL2 
Broad Tumor PortalSMTNL2
OASIS PortalSMTNL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMTNL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMTNL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMTNL2
DgiDB (Drug Gene Interaction Database)SMTNL2
DoCM (Curated mutations)SMTNL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMTNL2 (select a term)
intoGenSMTNL2
Cancer3DSMTNL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMTNL2
Genetic Testing Registry SMTNL2
NextProtQ2TAL5 [Medical]
TSGene342527
GENETestsSMTNL2
Huge Navigator SMTNL2 [HugePedia]
snp3D : Map Gene to Disease342527
BioCentury BCIQSMTNL2
ClinGenSMTNL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342527
Chemical/Pharm GKB GenePA145007828
Clinical trialSMTNL2
Miscellaneous
canSAR (ICR)SMTNL2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMTNL2
EVEXSMTNL2
GoPubMedSMTNL2
iHOPSMTNL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:19 CET 2017

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