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SMYD4 (SET and MYND domain containing 4)

Identity

Other namesZMYND21
HGNC (Hugo) SMYD4
LocusID (NCBI) 114826
Atlas_Id 47346
Location 17p13.3
Location_base_pair Starts at 1682829 and ends at 1733175 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SMYD4   21067
Cards
Entrez_Gene (NCBI)SMYD4  114826  SET and MYND domain containing 4
GeneCards (Weizmann)SMYD4
Ensembl hg19 (Hinxton)ENSG00000186532 [Gene_View]  chr17:1682829-1733175 [Contig_View]  SMYD4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186532 [Gene_View]  chr17:1682829-1733175 [Contig_View]  SMYD4 [Vega]
ICGC DataPortalENSG00000186532
TCGA cBioPortalSMYD4
AceView (NCBI)SMYD4
Genatlas (Paris)SMYD4
WikiGenes114826
SOURCE (Princeton)SMYD4
Genomic and cartography
GoldenPath hg19 (UCSC)SMYD4  -     chr17:1682829-1733175 -  17p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SMYD4  -     17p13.3   [Description]    (hg38-Dec_2013)
EnsemblSMYD4 - 17p13.3 [CytoView hg19]  SMYD4 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBISMYD4 [Mapview hg19]  SMYD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067523 AK057769 AK092149 AK095369 AL137345
RefSeq transcript (Entrez)NM_052928
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)SMYD4
Cluster EST : UnigeneHs.514602 [ NCBI ]
CGAP (NCI)Hs.514602
Alternative Splicing : Fast-db (Paris)GSHG0012969
Alternative Splicing GalleryENSG00000186532
Gene ExpressionSMYD4 [ NCBI-GEO ]     SMYD4 [ SEEK ]   SMYD4 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYR2 (Uniprot)
NextProtQ8IYR2  [Medical]  [Publications]
With graphics : InterProQ8IYR2
Splice isoforms : SwissVarQ8IYR2 (Swissvar)
Domaine pattern : Prosite (Expaxy)SET (PS50280)    ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domains : Interpro (EBI)SET_dom    TPR-like_helical_dom    Znf_MYND   
Related proteins : CluSTrQ8IYR2
Domain families : Pfam (Sanger)SET (PF00856)    zf-MYND (PF01753)   
Domain families : Pfam (NCBI)pfam00856    pfam01753   
Domain families : Smart (EMBL)SET (SM00317)  
DMDM Disease mutations114826
Blocks (Seattle)Q8IYR2
Human Protein AtlasENSG00000186532
Peptide AtlasQ8IYR2
HPRD18079
IPIIPI00410192   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYR2
IntAct (EBI)Q8IYR2
FunCoupENSG00000186532
BioGRIDSMYD4
IntegromeDBSMYD4
STRING (EMBL)SMYD4
Ontologies - Pathways
QuickGOQ8IYR2
Ontology : AmiGOmethyltransferase activity  methylation  metal ion binding  
Ontology : EGO-EBImethyltransferase activity  methylation  metal ion binding  
Protein Interaction DatabaseSMYD4
DoCM (Curated mutations)SMYD4
Wikipedia pathwaysSMYD4
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerSMYD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMYD4
dbVarSMYD4
ClinVarSMYD4
1000_GenomesSMYD4 
Exome Variant ServerSMYD4
SNP (GeneSNP Utah)SMYD4
SNP : HGBaseSMYD4
Genetic variants : HAPMAPSMYD4
Genomic Variants (DGV)SMYD4 [DGVbeta]
Mutations
ICGC Data PortalSMYD4 
TCGA Data PortalSMYD4 
Tumor PortalSMYD4
Somatic Mutations in Cancer : COSMICSMYD4 
LOVD (Leiden Open Variation Database)genes/SMYD4
LOVD (Leiden Open Variation Database)genes/SMYD4
LOVD (Leiden Open Variation Database)genes/SMYD4
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:1682829-1733175
CONAN: Copy Number AnalysisSMYD4 
Mutations and Diseases : HGMDSMYD4
OMIM
MedgenSMYD4
NextProtQ8IYR2 [Medical]
GENETestsSMYD4
Disease Genetic AssociationSMYD4
Huge Navigator SMYD4 [HugePedia]  SMYD4 [HugeCancerGEM]
snp3D : Map Gene to Disease114826
DGIdb (Drug Gene Interaction db)SMYD4
BioCentury BCIQSMYD4
General knowledge
Homologs : HomoloGeneSMYD4
Homology/Alignments : Family Browser (UCSC)SMYD4
Phylogenetic Trees/Animal Genes : TreeFamSMYD4
Chemical/Protein Interactions : CTD114826
Chemical/Pharm GKB GenePA134925431
Clinical trialSMYD4
Cancer Resource (Charite)ENSG00000186532
Other databases
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
CoreMineSMYD4
GoPubMedSMYD4
iHOPSMYD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 29 19:21:37 CEST 2015

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