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SMYD4 (SET and MYND domain containing 4)

Identity

Alias_symbol (synonym)KIAA1936
ZMYND21
HGNC (Hugo) SMYD4
LocusID (NCBI) 114826
Atlas_Id 47346
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 1682829 and ends at 1733175 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SMYD4 (17p13.3) / RPA1 (17p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMYD4   21067
Cards
Entrez_Gene (NCBI)SMYD4  114826  SET and MYND domain containing 4
AliasesZMYND21
GeneCards (Weizmann)SMYD4
Ensembl hg19 (Hinxton)ENSG00000186532 [Gene_View]  chr17:1682829-1733175 [Contig_View]  SMYD4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186532 [Gene_View]  chr17:1682829-1733175 [Contig_View]  SMYD4 [Vega]
ICGC DataPortalENSG00000186532
TCGA cBioPortalSMYD4
AceView (NCBI)SMYD4
Genatlas (Paris)SMYD4
WikiGenes114826
SOURCE (Princeton)SMYD4
Genetics Home Reference (NIH)SMYD4
Genomic and cartography
GoldenPath hg19 (UCSC)SMYD4  -     chr17:1682829-1733175 -  17p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SMYD4  -     17p13.3   [Description]    (hg38-Dec_2013)
EnsemblSMYD4 - 17p13.3 [CytoView hg19]  SMYD4 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBISMYD4 [Mapview hg19]  SMYD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067523 AK057769 AK092149 AK095369 AL137345
RefSeq transcript (Entrez)NM_052928
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)SMYD4
Cluster EST : UnigeneHs.514602 [ NCBI ]
CGAP (NCI)Hs.514602
Alternative Splicing GalleryENSG00000186532
Gene ExpressionSMYD4 [ NCBI-GEO ]   SMYD4 [ EBI - ARRAY_EXPRESS ]   SMYD4 [ SEEK ]   SMYD4 [ MEM ]
Gene Expression Viewer (FireBrowse)SMYD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114826
GTEX Portal (Tissue expression)SMYD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYR2
Splice isoforms : SwissVarQ8IYR2
PhosPhoSitePlusQ8IYR2
Domaine pattern : Prosite (Expaxy)SET (PS50280)    ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domains : Interpro (EBI)SET_dom    TPR-like_helical_dom    Znf_MYND   
Domain families : Pfam (Sanger)SET (PF00856)    TPR_11 (PF13414)    zf-MYND (PF01753)   
Domain families : Pfam (NCBI)pfam00856    pfam13414    pfam01753   
Domain families : Smart (EMBL)SET (SM00317)  
Conserved Domain (NCBI)SMYD4
DMDM Disease mutations114826
Blocks (Seattle)SMYD4
SuperfamilyQ8IYR2
Human Protein AtlasENSG00000186532
Peptide AtlasQ8IYR2
HPRD18079
IPIIPI00410192   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYR2
IntAct (EBI)Q8IYR2
FunCoupENSG00000186532
BioGRIDSMYD4
STRING (EMBL)SMYD4
ZODIACSMYD4
Ontologies - Pathways
QuickGOQ8IYR2
Ontology : AmiGOmethyltransferase activity  methylation  metal ion binding  
Ontology : EGO-EBImethyltransferase activity  methylation  metal ion binding  
NDEx NetworkSMYD4
Atlas of Cancer Signalling NetworkSMYD4
Wikipedia pathwaysSMYD4
Orthology - Evolution
OrthoDB114826
GeneTree (enSembl)ENSG00000186532
Phylogenetic Trees/Animal Genes : TreeFamSMYD4
HOVERGENQ8IYR2
HOGENOMQ8IYR2
Homologs : HomoloGeneSMYD4
Homology/Alignments : Family Browser (UCSC)SMYD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMYD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMYD4
dbVarSMYD4
ClinVarSMYD4
1000_GenomesSMYD4 
Exome Variant ServerSMYD4
ExAC (Exome Aggregation Consortium)SMYD4 (select the gene name)
Genetic variants : HAPMAP114826
Genomic Variants (DGV)SMYD4 [DGVbeta]
DECIPHER (Syndromes)17:1682829-1733175  ENSG00000186532
CONAN: Copy Number AnalysisSMYD4 
Mutations
ICGC Data PortalSMYD4 
TCGA Data PortalSMYD4 
Broad Tumor PortalSMYD4
OASIS PortalSMYD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMYD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMYD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMYD4
DgiDB (Drug Gene Interaction Database)SMYD4
DoCM (Curated mutations)SMYD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMYD4 (select a term)
intoGenSMYD4
Cancer3DSMYD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMYD4
Genetic Testing Registry SMYD4
NextProtQ8IYR2 [Medical]
TSGene114826
GENETestsSMYD4
Huge Navigator SMYD4 [HugePedia]
snp3D : Map Gene to Disease114826
BioCentury BCIQSMYD4
ClinGenSMYD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114826
Chemical/Pharm GKB GenePA134925431
Clinical trialSMYD4
Miscellaneous
canSAR (ICR)SMYD4 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMYD4
EVEXSMYD4
GoPubMedSMYD4
iHOPSMYD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:52:03 CET 2016

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