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SMYD5 (SMYD family member 5)

Identity

Alias (NCBI)NN8-4AG
RAI15
RRG1
ZMYND23
HGNC (Hugo) SMYD5
HGNC Alias symbRRG1
NN8-4AG
ZMYND23
HGNC Previous nameRAI15
HGNC Previous nameretinoic acid induced 15
LocusID (NCBI) 10322
Atlas_Id 47081
Location 2p13.2  [Link to chromosome band 2p13]
Location_base_pair Starts at 73214245 and ends at 73227221 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SMYD5 (2p13.2) / PSMB7 (9q33.3)SMYD5 (2p13.2) / RREB1 (6p24.3)TELO2 (16p13.3) / SMYD5 (2p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SMYD5   16258
Cards
Entrez_Gene (NCBI)SMYD5    SMYD family member 5
AliasesNN8-4AG; RAI15; RRG1; ZMYND23
GeneCards (Weizmann)SMYD5
Ensembl hg19 (Hinxton)ENSG00000135632 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135632 [Gene_View]  ENSG00000135632 [Sequence]  chr2:73214245-73227221 [Contig_View]  SMYD5 [Vega]
ICGC DataPortalENSG00000135632
TCGA cBioPortalSMYD5
AceView (NCBI)SMYD5
Genatlas (Paris)SMYD5
SOURCE (Princeton)SMYD5
Genetics Home Reference (NIH)SMYD5
Genomic and cartography
GoldenPath hg38 (UCSC)SMYD5  -     chr2:73214245-73227221 +  2p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMYD5  -     2p13.2   [Description]    (hg19-Feb_2009)
GoldenPathSMYD5 - 2p13.2 [CytoView hg19]  SMYD5 - 2p13.2 [CytoView hg38]
ImmunoBaseENSG00000135632
Genome Data Viewer NCBISMYD5 [Mapview hg19]  
OMIM619114   
Gene and transcription
Genbank (Entrez)AK300779 AK301809 BC009484 BC073806 DC303248
RefSeq transcript (Entrez)NM_006062
Consensus coding sequences : CCDS (NCBI)SMYD5
Gene ExpressionSMYD5 [ NCBI-GEO ]   SMYD5 [ EBI - ARRAY_EXPRESS ]   SMYD5 [ SEEK ]   SMYD5 [ MEM ]
Gene Expression Viewer (FireBrowse)SMYD5 [ Firebrowse - Broad ]
GenevisibleExpression of SMYD5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10322
GTEX Portal (Tissue expression)SMYD5
Human Protein AtlasENSG00000135632-SMYD5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6GMV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6GMV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6GMV2
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ6GMV2
Domaine pattern : Prosite (Expaxy)SET (PS50280)   
Domains : Interpro (EBI)SET_dom   
Domain families : Pfam (Sanger)SET (PF00856)   
Domain families : Pfam (NCBI)pfam00856   
Domain families : Smart (EMBL)SET (SM00317)  
Conserved Domain (NCBI)SMYD5
SuperfamilyQ6GMV2
AlphaFold pdb e-kbQ6GMV2   
Human Protein Atlas [tissue]ENSG00000135632-SMYD5 [tissue]
HPRD18080
Protein Interaction databases
DIP (DOE-UCLA)Q6GMV2
IntAct (EBI)Q6GMV2
BioGRIDSMYD5
STRING (EMBL)SMYD5
ZODIACSMYD5
Ontologies - Pathways
QuickGOQ6GMV2
Ontology : AmiGOprotein binding  cellular_component  negative regulation of transposition  histone H4-K20 trimethylation  histone methyltransferase activity (H4-K20 specific)  negative regulation of gene expression, epigenetic  metal ion binding  regulation of stem cell division  regulation of stem cell differentiation  regulation of stem cell differentiation  
Ontology : EGO-EBIprotein binding  cellular_component  negative regulation of transposition  histone H4-K20 trimethylation  histone methyltransferase activity (H4-K20 specific)  negative regulation of gene expression, epigenetic  metal ion binding  regulation of stem cell division  regulation of stem cell differentiation  regulation of stem cell differentiation  
NDEx NetworkSMYD5
Atlas of Cancer Signalling NetworkSMYD5
Wikipedia pathwaysSMYD5
Orthology - Evolution
OrthoDB10322
GeneTree (enSembl)ENSG00000135632
Phylogenetic Trees/Animal Genes : TreeFamSMYD5
Homologs : HomoloGeneSMYD5
Homology/Alignments : Family Browser (UCSC)SMYD5
Gene fusions - Rearrangements
Fusion : QuiverSMYD5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMYD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMYD5
dbVarSMYD5
ClinVarSMYD5
MonarchSMYD5
1000_GenomesSMYD5 
Exome Variant ServerSMYD5
GNOMAD BrowserENSG00000135632
Varsome BrowserSMYD5
ACMGSMYD5 variants
VarityQ6GMV2
Genomic Variants (DGV)SMYD5 [DGVbeta]
DECIPHERSMYD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMYD5 
Mutations
ICGC Data PortalSMYD5 
TCGA Data PortalSMYD5 
Broad Tumor PortalSMYD5
OASIS PortalSMYD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMYD5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSMYD5
Mutations and Diseases : HGMDSMYD5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSMYD5
DgiDB (Drug Gene Interaction Database)SMYD5
DoCM (Curated mutations)SMYD5
CIViC (Clinical Interpretations of Variants in Cancer)SMYD5
Cancer3DSMYD5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM619114   
Orphanet
DisGeNETSMYD5
MedgenSMYD5
Genetic Testing Registry SMYD5
NextProtQ6GMV2 [Medical]
GENETestsSMYD5
Target ValidationSMYD5
Huge Navigator SMYD5 [HugePedia]
ClinGenSMYD5
Clinical trials, drugs, therapy
MyCancerGenomeSMYD5
Protein Interactions : CTDSMYD5
Pharm GKB GenePA34190
PharosQ6GMV2
Clinical trialSMYD5
Miscellaneous
canSAR (ICR)SMYD5
HarmonizomeSMYD5
DataMed IndexSMYD5
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSMYD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:32:19 CEST 2021

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