Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SMYD5 (SMYD family member 5)

Identity

Alias_namesRAI15
retinoic acid induced 15
Alias_symbol (synonym)RRG1
NN8-4AG
ZMYND23
Other alias
HGNC (Hugo) SMYD5
LocusID (NCBI) 10322
Atlas_Id 47081
Location 2p13.2  [Link to chromosome band 2p13]
Location_base_pair Starts at 73214238 and ends at 73227227 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SMYD5 (2p13.2) / PSMB7 (9q33.3)SMYD5 (2p13.2) / RREB1 (6p24.3)TELO2 (16p13.3) / SMYD5 (2p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMYD5   16258
Cards
Entrez_Gene (NCBI)SMYD5  10322  SMYD family member 5
AliasesNN8-4AG; RAI15; RRG1; ZMYND23
GeneCards (Weizmann)SMYD5
Ensembl hg19 (Hinxton)ENSG00000135632 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135632 [Gene_View]  chr2:73214238-73227227 [Contig_View]  SMYD5 [Vega]
ICGC DataPortalENSG00000135632
TCGA cBioPortalSMYD5
AceView (NCBI)SMYD5
Genatlas (Paris)SMYD5
WikiGenes10322
SOURCE (Princeton)SMYD5
Genetics Home Reference (NIH)SMYD5
Genomic and cartography
GoldenPath hg38 (UCSC)SMYD5  -     chr2:73214238-73227227 +  2p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMYD5  -     2p13.2   [Description]    (hg19-Feb_2009)
EnsemblSMYD5 - 2p13.2 [CytoView hg19]  SMYD5 - 2p13.2 [CytoView hg38]
Mapping of homologs : NCBISMYD5 [Mapview hg19]  SMYD5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK300779 AK301809 BC009484 BC073806 DC303248
RefSeq transcript (Entrez)NM_006062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMYD5
Cluster EST : UnigeneHs.631882 [ NCBI ]
CGAP (NCI)Hs.631882
Alternative Splicing GalleryENSG00000135632
Gene ExpressionSMYD5 [ NCBI-GEO ]   SMYD5 [ EBI - ARRAY_EXPRESS ]   SMYD5 [ SEEK ]   SMYD5 [ MEM ]
Gene Expression Viewer (FireBrowse)SMYD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10322
GTEX Portal (Tissue expression)SMYD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6GMV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6GMV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6GMV2
Splice isoforms : SwissVarQ6GMV2
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusQ6GMV2
Domaine pattern : Prosite (Expaxy)SET (PS50280)   
Domains : Interpro (EBI)SET_dom   
Domain families : Pfam (Sanger)SET (PF00856)   
Domain families : Pfam (NCBI)pfam00856   
Domain families : Smart (EMBL)SET (SM00317)  
Conserved Domain (NCBI)SMYD5
DMDM Disease mutations10322
Blocks (Seattle)SMYD5
SuperfamilyQ6GMV2
Human Protein AtlasENSG00000135632
Peptide AtlasQ6GMV2
HPRD18080
IPIIPI00013789   IPI00878988   IPI00879662   IPI00879515   
Protein Interaction databases
DIP (DOE-UCLA)Q6GMV2
IntAct (EBI)Q6GMV2
FunCoupENSG00000135632
BioGRIDSMYD5
STRING (EMBL)SMYD5
ZODIACSMYD5
Ontologies - Pathways
QuickGOQ6GMV2
Ontology : AmiGOmolecular_function  cellular_component  biological_process  methyltransferase activity  methylation  metal ion binding  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  methyltransferase activity  methylation  metal ion binding  
NDEx NetworkSMYD5
Atlas of Cancer Signalling NetworkSMYD5
Wikipedia pathwaysSMYD5
Orthology - Evolution
OrthoDB10322
GeneTree (enSembl)ENSG00000135632
Phylogenetic Trees/Animal Genes : TreeFamSMYD5
HOVERGENQ6GMV2
HOGENOMQ6GMV2
Homologs : HomoloGeneSMYD5
Homology/Alignments : Family Browser (UCSC)SMYD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMYD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMYD5
dbVarSMYD5
ClinVarSMYD5
1000_GenomesSMYD5 
Exome Variant ServerSMYD5
ExAC (Exome Aggregation Consortium)SMYD5 (select the gene name)
Genetic variants : HAPMAP10322
Genomic Variants (DGV)SMYD5 [DGVbeta]
DECIPHERSMYD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMYD5 
Mutations
ICGC Data PortalSMYD5 
TCGA Data PortalSMYD5 
Broad Tumor PortalSMYD5
OASIS PortalSMYD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMYD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMYD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMYD5
DgiDB (Drug Gene Interaction Database)SMYD5
DoCM (Curated mutations)SMYD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMYD5 (select a term)
intoGenSMYD5
Cancer3DSMYD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMYD5
Genetic Testing Registry SMYD5
NextProtQ6GMV2 [Medical]
TSGene10322
GENETestsSMYD5
Huge Navigator SMYD5 [HugePedia]
snp3D : Map Gene to Disease10322
BioCentury BCIQSMYD5
ClinGenSMYD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10322
Chemical/Pharm GKB GenePA34190
Clinical trialSMYD5
Miscellaneous
canSAR (ICR)SMYD5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMYD5
EVEXSMYD5
GoPubMedSMYD5
iHOPSMYD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:38:17 CEST 2017

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