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SNAI3-AS1 (SNAI3 antisense RNA 1)

Identity

Alias_symbol (synonym)MGC23284
Other alias-
HGNC (Hugo) SNAI3-AS1
LocusID (NCBI) 197187
Atlas_Id 73597
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 88673396 and ends at 88675491 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNAI3-AS1   28327
Cards
Entrez_Gene (NCBI)SNAI3-AS1  197187  SNAI3 antisense RNA 1
Aliases
GeneCards (Weizmann)SNAI3-AS1
Ensembl hg19 (Hinxton)ENSG00000260630 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260630 [Gene_View]  chr16:88673396-88675491 [Contig_View]  SNAI3-AS1 [Vega]
ICGC DataPortalENSG00000260630
TCGA cBioPortalSNAI3-AS1
AceView (NCBI)SNAI3-AS1
Genatlas (Paris)SNAI3-AS1
WikiGenes197187
SOURCE (Princeton)SNAI3-AS1
Genetics Home Reference (NIH)SNAI3-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SNAI3-AS1  -     chr16:88673396-88675491 +  16q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNAI3-AS1  -     16q24.2   [Description]    (hg19-Feb_2009)
EnsemblSNAI3-AS1 - 16q24.2 [CytoView hg19]  SNAI3-AS1 - 16q24.2 [CytoView hg38]
Mapping of homologs : NCBISNAI3-AS1 [Mapview hg19]  SNAI3-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094837 AY203928 BC015583 BC050404 BQ446432
RefSeq transcript (Entrez)NM_144986
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNAI3-AS1
Cluster EST : UnigeneHs.499548 [ NCBI ]
CGAP (NCI)Hs.499548
Alternative Splicing GalleryENSG00000260630
Gene ExpressionSNAI3-AS1 [ NCBI-GEO ]   SNAI3-AS1 [ EBI - ARRAY_EXPRESS ]   SNAI3-AS1 [ SEEK ]   SNAI3-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SNAI3-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)197187
GTEX Portal (Tissue expression)SNAI3-AS1
Human Protein AtlasENSG00000260630-SNAI3-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNAI3-AS1
DMDM Disease mutations197187
Blocks (Seattle)SNAI3-AS1
Human Protein Atlas [tissue]ENSG00000260630-SNAI3-AS1 [tissue]
IPIIPI00428749   IPI00884215   
Protein Interaction databases
FunCoupENSG00000260630
BioGRIDSNAI3-AS1
STRING (EMBL)SNAI3-AS1
ZODIACSNAI3-AS1
Ontologies - Pathways
Huge Navigator SNAI3-AS1 [HugePedia]
snp3D : Map Gene to Disease197187
BioCentury BCIQSNAI3-AS1
ClinGenSNAI3-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD197187
Clinical trialSNAI3-AS1
Miscellaneous
canSAR (ICR)SNAI3-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNAI3-AS1
EVEXSNAI3-AS1
GoPubMedSNAI3-AS1
iHOPSNAI3-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:34:21 CET 2017

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