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SNAI3 (snail family transcriptional repressor 3)

Identity

Alias_namesZNF293
zinc finger protein 293
snail homolog 3 (Drosophila)
snail family zinc finger 3
Alias_symbol (synonym)SMUC
Zfp293
Other aliasSNAIL3
HGNC (Hugo) SNAI3
LocusID (NCBI) 333929
Atlas_Id 55000
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 88677682 and ends at 88686474 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNAI3   18411
Cards
Entrez_Gene (NCBI)SNAI3  333929  snail family transcriptional repressor 3
AliasesSMUC; SNAIL3; ZNF293; Zfp293
GeneCards (Weizmann)SNAI3
Ensembl hg19 (Hinxton)ENSG00000185669 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185669 [Gene_View]  ENSG00000185669 [Sequence]  chr16:88677682-88686474 [Contig_View]  SNAI3 [Vega]
ICGC DataPortalENSG00000185669
TCGA cBioPortalSNAI3
AceView (NCBI)SNAI3
Genatlas (Paris)SNAI3
WikiGenes333929
SOURCE (Princeton)SNAI3
Genetics Home Reference (NIH)SNAI3
Genomic and cartography
GoldenPath hg38 (UCSC)SNAI3  -     chr16:88677682-88686474 -  16q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNAI3  -     16q24.2   [Description]    (hg19-Feb_2009)
EnsemblSNAI3 - 16q24.2 [CytoView hg19]  SNAI3 - 16q24.2 [CytoView hg38]
Mapping of homologs : NCBISNAI3 [Mapview hg19]  SNAI3 [Mapview hg38]
OMIM612741   
Gene and transcription
Genbank (Entrez)BC041461 BC107058
RefSeq transcript (Entrez)NM_178310
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNAI3
Cluster EST : UnigeneHs.673548 [ NCBI ]
CGAP (NCI)Hs.673548
Alternative Splicing GalleryENSG00000185669
Gene ExpressionSNAI3 [ NCBI-GEO ]   SNAI3 [ EBI - ARRAY_EXPRESS ]   SNAI3 [ SEEK ]   SNAI3 [ MEM ]
Gene Expression Viewer (FireBrowse)SNAI3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)333929
GTEX Portal (Tissue expression)SNAI3
Human Protein AtlasENSG00000185669-SNAI3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KNW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KNW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KNW1
Splice isoforms : SwissVarQ3KNW1
PhosPhoSitePlusQ3KNW1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Cu_oxidase_Cu_BS    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)SNAI3
DMDM Disease mutations333929
Blocks (Seattle)SNAI3
SuperfamilyQ3KNW1
Human Protein Atlas [tissue]ENSG00000185669-SNAI3 [tissue]
Peptide AtlasQ3KNW1
HPRD18781
IPIIPI00238737   
Protein Interaction databases
DIP (DOE-UCLA)Q3KNW1
IntAct (EBI)Q3KNW1
FunCoupENSG00000185669
BioGRIDSNAI3
STRING (EMBL)SNAI3
ZODIACSNAI3
Ontologies - Pathways
QuickGOQ3KNW1
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA binding  DNA-binding transcription factor activity  copper ion binding  nucleus  transcription factor complex  regulation of transcription, DNA-templated  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA binding  DNA-binding transcription factor activity  copper ion binding  nucleus  transcription factor complex  regulation of transcription, DNA-templated  
NDEx NetworkSNAI3
Atlas of Cancer Signalling NetworkSNAI3
Wikipedia pathwaysSNAI3
Orthology - Evolution
OrthoDB333929
GeneTree (enSembl)ENSG00000185669
Phylogenetic Trees/Animal Genes : TreeFamSNAI3
HOVERGENQ3KNW1
HOGENOMQ3KNW1
Homologs : HomoloGeneSNAI3
Homology/Alignments : Family Browser (UCSC)SNAI3
Gene fusions - Rearrangements
Fusion : QuiverSNAI3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNAI3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNAI3
dbVarSNAI3
ClinVarSNAI3
1000_GenomesSNAI3 
Exome Variant ServerSNAI3
ExAC (Exome Aggregation Consortium)ENSG00000185669
GNOMAD BrowserENSG00000185669
Varsome BrowserSNAI3
Genetic variants : HAPMAP333929
Genomic Variants (DGV)SNAI3 [DGVbeta]
DECIPHERSNAI3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNAI3 
Mutations
ICGC Data PortalSNAI3 
TCGA Data PortalSNAI3 
Broad Tumor PortalSNAI3
OASIS PortalSNAI3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNAI3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNAI3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNAI3
DgiDB (Drug Gene Interaction Database)SNAI3
DoCM (Curated mutations)SNAI3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNAI3 (select a term)
intoGenSNAI3
Cancer3DSNAI3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612741   
Orphanet
DisGeNETSNAI3
MedgenSNAI3
Genetic Testing Registry SNAI3
NextProtQ3KNW1 [Medical]
TSGene333929
GENETestsSNAI3
Target ValidationSNAI3
Huge Navigator SNAI3 [HugePedia]
snp3D : Map Gene to Disease333929
BioCentury BCIQSNAI3
ClinGenSNAI3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD333929
Chemical/Pharm GKB GenePA134988226
Clinical trialSNAI3
Miscellaneous
canSAR (ICR)SNAI3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNAI3
EVEXSNAI3
GoPubMedSNAI3
iHOPSNAI3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:40:44 CET 2018

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