Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SNAP23 (synaptosome associated protein 23)

Identity

Alias_namessynaptosomal-associated protein
Alias_symbol (synonym)SNAP23A
SNAP23B
HsT17016
Other aliasSNAP-23
HGNC (Hugo) SNAP23
LocusID (NCBI) 8773
Atlas_Id 50583
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 42495306 and ends at 42533061 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DAGLB (7p22.1) / SNAP23 (15q15.1)SFXN5 (2p13.2) / SNAP23 (15q15.1)SNAP23 (15q15.1) / BAZ2A (12q13.3)
SNAP23 (15q15.1) / SNAP23 (15q15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SNAP23   11131
Cards
Entrez_Gene (NCBI)SNAP23  8773  synaptosome associated protein 23
AliasesHsT17016; SNAP-23; SNAP23A; SNAP23B
GeneCards (Weizmann)SNAP23
Ensembl hg19 (Hinxton)ENSG00000092531 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000092531 [Gene_View]  ENSG00000092531 [Sequence]  chr15:42495306-42533061 [Contig_View]  SNAP23 [Vega]
ICGC DataPortalENSG00000092531
TCGA cBioPortalSNAP23
AceView (NCBI)SNAP23
Genatlas (Paris)SNAP23
WikiGenes8773
SOURCE (Princeton)SNAP23
Genetics Home Reference (NIH)SNAP23
Genomic and cartography
GoldenPath hg38 (UCSC)SNAP23  -     chr15:42495306-42533061 +  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNAP23  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblSNAP23 - 15q15.1 [CytoView hg19]  SNAP23 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBISNAP23 [Mapview hg19]  SNAP23 [Mapview hg38]
OMIM602534   
Gene and transcription
Genbank (Entrez)AJ011915 AK290152 AK313161 AK315279 BC000148
RefSeq transcript (Entrez)NM_003825 NM_130798
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNAP23
Cluster EST : UnigeneHs.511149 [ NCBI ]
CGAP (NCI)Hs.511149
Alternative Splicing GalleryENSG00000092531
Gene ExpressionSNAP23 [ NCBI-GEO ]   SNAP23 [ EBI - ARRAY_EXPRESS ]   SNAP23 [ SEEK ]   SNAP23 [ MEM ]
Gene Expression Viewer (FireBrowse)SNAP23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8773
GTEX Portal (Tissue expression)SNAP23
Human Protein AtlasENSG00000092531-SNAP23 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00161   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00161  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00161
Splice isoforms : SwissVarO00161
PhosPhoSitePlusO00161
Domaine pattern : Prosite (Expaxy)T_SNARE (PS50192)   
Domains : Interpro (EBI)SNAP-25    T_SNARE_dom   
Domain families : Pfam (Sanger)SNAP-25 (PF00835)   
Domain families : Pfam (NCBI)pfam00835   
Domain families : Smart (EMBL)t_SNARE (SM00397)  
Conserved Domain (NCBI)SNAP23
DMDM Disease mutations8773
Blocks (Seattle)SNAP23
PDB (RSDB)1NHL    3ZUS   
PDB Europe1NHL    3ZUS   
PDB (PDBSum)1NHL    3ZUS   
PDB (IMB)1NHL    3ZUS   
Structural Biology KnowledgeBase1NHL    3ZUS   
SCOP (Structural Classification of Proteins)1NHL    3ZUS   
CATH (Classification of proteins structures)1NHL    3ZUS   
SuperfamilyO00161
Human Protein Atlas [tissue]ENSG00000092531-SNAP23 [tissue]
Peptide AtlasO00161
HPRD03962
IPIIPI00010438   IPI00216231   
Protein Interaction databases
DIP (DOE-UCLA)O00161
IntAct (EBI)O00161
FunCoupENSG00000092531
BioGRIDSNAP23
STRING (EMBL)SNAP23
ZODIACSNAP23
Ontologies - Pathways
QuickGOO00161
Ontology : AmiGOantigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent  histamine secretion by mast cell  SNAP receptor activity  protein binding  nucleoplasm  cytoplasm  plasma membrane  plasma membrane  plasma membrane  cell-cell adherens junction  focal adhesion  exocytosis  post-Golgi vesicle-mediated transport  vesicle targeting  vesicle fusion  protein transport  synaptic vesicle priming  syntaxin binding  syntaxin binding  phagocytic vesicle membrane  SNARE complex  SNARE complex  synaptic vesicle fusion to presynaptic active zone membrane  specific granule membrane  specific granule  azurophil granule  mast cell granule  neuron projection  neutrophil degranulation  membrane fusion  extracellular exosome  tertiary granule membrane  presynapse  
Ontology : EGO-EBIantigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent  histamine secretion by mast cell  SNAP receptor activity  protein binding  nucleoplasm  cytoplasm  plasma membrane  plasma membrane  plasma membrane  cell-cell adherens junction  focal adhesion  exocytosis  post-Golgi vesicle-mediated transport  vesicle targeting  vesicle fusion  protein transport  synaptic vesicle priming  syntaxin binding  syntaxin binding  phagocytic vesicle membrane  SNARE complex  SNARE complex  synaptic vesicle fusion to presynaptic active zone membrane  specific granule membrane  specific granule  azurophil granule  mast cell granule  neuron projection  neutrophil degranulation  membrane fusion  extracellular exosome  tertiary granule membrane  presynapse  
Pathways : KEGGSNARE interactions in vesicular transport    Insulin secretion   
NDEx NetworkSNAP23
Atlas of Cancer Signalling NetworkSNAP23
Wikipedia pathwaysSNAP23
Orthology - Evolution
OrthoDB8773
GeneTree (enSembl)ENSG00000092531
Phylogenetic Trees/Animal Genes : TreeFamSNAP23
HOGENOMO00161
Homologs : HomoloGeneSNAP23
Homology/Alignments : Family Browser (UCSC)SNAP23
Gene fusions - Rearrangements
Fusion : QuiverSNAP23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNAP23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNAP23
dbVarSNAP23
ClinVarSNAP23
1000_GenomesSNAP23 
Exome Variant ServerSNAP23
ExAC (Exome Aggregation Consortium)ENSG00000092531
GNOMAD BrowserENSG00000092531
Varsome BrowserSNAP23
Genetic variants : HAPMAP8773
Genomic Variants (DGV)SNAP23 [DGVbeta]
DECIPHERSNAP23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNAP23 
Mutations
ICGC Data PortalSNAP23 
TCGA Data PortalSNAP23 
Broad Tumor PortalSNAP23
OASIS PortalSNAP23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNAP23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNAP23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNAP23
DgiDB (Drug Gene Interaction Database)SNAP23
DoCM (Curated mutations)SNAP23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNAP23 (select a term)
intoGenSNAP23
Cancer3DSNAP23(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602534   
Orphanet
DisGeNETSNAP23
MedgenSNAP23
Genetic Testing Registry SNAP23
NextProtO00161 [Medical]
TSGene8773
GENETestsSNAP23
Target ValidationSNAP23
Huge Navigator SNAP23 [HugePedia]
snp3D : Map Gene to Disease8773
BioCentury BCIQSNAP23
ClinGenSNAP23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8773
Chemical/Pharm GKB GenePA35979
Clinical trialSNAP23
Miscellaneous
canSAR (ICR)SNAP23 (select the gene name)
DataMed IndexSNAP23
Probes
Litterature
PubMed104 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNAP23
EVEXSNAP23
GoPubMedSNAP23
iHOPSNAP23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 17 18:39:18 CET 2019
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