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SNAP29 (synaptosome associated protein 29)

Identity

Alias_namessynaptosomal-associated protein
Alias_symbol (synonym)SNAP-29
CEDNIK
Other alias
HGNC (Hugo) SNAP29
LocusID (NCBI) 9342
Atlas_Id 56477
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 20859004 and ends at 20891213 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CRKL (22q11.21) / SNAP29 (22q11.21)SLC2A11 (22q11.23) / SNAP29 (22q11.21)SNAP29 (22q11.21) / CELSR1 (22q13.31)
SNAP29 (22q11.21) / IGLL1 (22q11.23)SNAP29 (22q11.21) / SNAP29 (22q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNAP29   11133
Cards
Entrez_Gene (NCBI)SNAP29  9342  synaptosome associated protein 29
AliasesCEDNIK; SNAP-29
GeneCards (Weizmann)SNAP29
Ensembl hg19 (Hinxton)ENSG00000099940 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099940 [Gene_View]  chr22:20859004-20891213 [Contig_View]  SNAP29 [Vega]
ICGC DataPortalENSG00000099940
TCGA cBioPortalSNAP29
AceView (NCBI)SNAP29
Genatlas (Paris)SNAP29
WikiGenes9342
SOURCE (Princeton)SNAP29
Genetics Home Reference (NIH)SNAP29
Genomic and cartography
GoldenPath hg38 (UCSC)SNAP29  -     chr22:20859004-20891213 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNAP29  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblSNAP29 - 22q11.21 [CytoView hg19]  SNAP29 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBISNAP29 [Mapview hg19]  SNAP29 [Mapview hg38]
OMIM604202   609528   
Gene and transcription
Genbank (Entrez)AF115436 AK024704 BC009715 BF435261 BG773022
RefSeq transcript (Entrez)NM_004782
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNAP29
Cluster EST : UnigeneHs.108002 [ NCBI ]
CGAP (NCI)Hs.108002
Alternative Splicing GalleryENSG00000099940
Gene ExpressionSNAP29 [ NCBI-GEO ]   SNAP29 [ EBI - ARRAY_EXPRESS ]   SNAP29 [ SEEK ]   SNAP29 [ MEM ]
Gene Expression Viewer (FireBrowse)SNAP29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9342
GTEX Portal (Tissue expression)SNAP29
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95721   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95721  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95721
Splice isoforms : SwissVarO95721
PhosPhoSitePlusO95721
Domaine pattern : Prosite (Expaxy)T_SNARE (PS50192)   
Domains : Interpro (EBI)T_SNARE_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)t_SNARE (SM00397)  
Conserved Domain (NCBI)SNAP29
DMDM Disease mutations9342
Blocks (Seattle)SNAP29
PDB (SRS)4WY4   
PDB (PDBSum)4WY4   
PDB (IMB)4WY4   
PDB (RSDB)4WY4   
Structural Biology KnowledgeBase4WY4   
SCOP (Structural Classification of Proteins)4WY4   
CATH (Classification of proteins structures)4WY4   
SuperfamilyO95721
Human Protein AtlasENSG00000099940
Peptide AtlasO95721
HPRD11968
IPIIPI00032831   IPI00877836   
Protein Interaction databases
DIP (DOE-UCLA)O95721
IntAct (EBI)O95721
FunCoupENSG00000099940
BioGRIDSNAP29
STRING (EMBL)SNAP29
ZODIACSNAP29
Ontologies - Pathways
QuickGOO95721
Ontology : AmiGOGolgi membrane  autophagosome membrane  SNAP receptor activity  protein binding  nucleoplasm  cytoplasm  autophagosome  centrosome  cytosol  plasma membrane  exocytosis  vesicle targeting  protein transport  synaptic vesicle priming  autophagosome docking  syntaxin binding  ciliary pocket membrane  SNARE complex  synaptic vesicle fusion to presynaptic active zone membrane  azurophil granule membrane  neutrophil degranulation  cilium assembly  membrane fusion  autophagosome maturation  presynapse  
Ontology : EGO-EBIGolgi membrane  autophagosome membrane  SNAP receptor activity  protein binding  nucleoplasm  cytoplasm  autophagosome  centrosome  cytosol  plasma membrane  exocytosis  vesicle targeting  protein transport  synaptic vesicle priming  autophagosome docking  syntaxin binding  ciliary pocket membrane  SNARE complex  synaptic vesicle fusion to presynaptic active zone membrane  azurophil granule membrane  neutrophil degranulation  cilium assembly  membrane fusion  autophagosome maturation  presynapse  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkSNAP29
Atlas of Cancer Signalling NetworkSNAP29
Wikipedia pathwaysSNAP29
Orthology - Evolution
OrthoDB9342
GeneTree (enSembl)ENSG00000099940
Phylogenetic Trees/Animal Genes : TreeFamSNAP29
HOVERGENO95721
HOGENOMO95721
Homologs : HomoloGeneSNAP29
Homology/Alignments : Family Browser (UCSC)SNAP29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNAP29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNAP29
dbVarSNAP29
ClinVarSNAP29
1000_GenomesSNAP29 
Exome Variant ServerSNAP29
ExAC (Exome Aggregation Consortium)SNAP29 (select the gene name)
Genetic variants : HAPMAP9342
Genomic Variants (DGV)SNAP29 [DGVbeta]
DECIPHERSNAP29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNAP29 
Mutations
ICGC Data PortalSNAP29 
TCGA Data PortalSNAP29 
Broad Tumor PortalSNAP29
OASIS PortalSNAP29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNAP29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNAP29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNAP29
DgiDB (Drug Gene Interaction Database)SNAP29
DoCM (Curated mutations)SNAP29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNAP29 (select a term)
intoGenSNAP29
Cancer3DSNAP29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604202    609528   
Orphanet10889   
MedgenSNAP29
Genetic Testing Registry SNAP29
NextProtO95721 [Medical]
TSGene9342
GENETestsSNAP29
Target ValidationSNAP29
Huge Navigator SNAP29 [HugePedia]
snp3D : Map Gene to Disease9342
BioCentury BCIQSNAP29
ClinGenSNAP29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9342
Chemical/Pharm GKB GenePA35981
Clinical trialSNAP29
Miscellaneous
canSAR (ICR)SNAP29 (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNAP29
EVEXSNAP29
GoPubMedSNAP29
iHOPSNAP29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:56:39 CEST 2017

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