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SNAP91 (synaptosome associated protein 91)

Identity

Alias_namessynaptosomal-associated protein
Alias_symbol (synonym)KIAA0656
AP180
CALM
Other alias
HGNC (Hugo) SNAP91
LocusID (NCBI) 9892
Atlas_Id 53048
Location 6q14.2  [Link to chromosome band 6q14]
Location_base_pair Starts at 83552886 and ends at 83709408 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ME1 (6q14.2) / SNAP91 (6q14.2)MLLT10 (10p12.31) / SNAP91 (6q14.2)PSME2 (14q12) / SNAP91 (6q14.2)
SNAP91 (6q14.2) / MLLT10 (10p12.31)SNAP91 (6q14.2) / SMPX (Xp22.12)ZNF680 (7q11.21) / SNAP91 (6q14.2)
ME1 6q14.2 / SNAP91 6q14.2SNAP91 6q14.2 / SMPX Xp22.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  ME1/SNAP91 (6q14)
t(X;6)(p22;q14) SNAP91/SMPX


External links

Nomenclature
HGNC (Hugo)SNAP91   14986
Cards
Entrez_Gene (NCBI)SNAP91  9892  synaptosome associated protein 91
AliasesAP180; CALM
GeneCards (Weizmann)SNAP91
Ensembl hg19 (Hinxton)ENSG00000065609 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000065609 [Gene_View]  ENSG00000065609 [Sequence]  chr6:83552886-83709408 [Contig_View]  SNAP91 [Vega]
ICGC DataPortalENSG00000065609
TCGA cBioPortalSNAP91
AceView (NCBI)SNAP91
Genatlas (Paris)SNAP91
WikiGenes9892
SOURCE (Princeton)SNAP91
Genetics Home Reference (NIH)SNAP91
Genomic and cartography
GoldenPath hg38 (UCSC)SNAP91  -     chr6:83552886-83709408 -  6q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNAP91  -     6q14.2   [Description]    (hg19-Feb_2009)
EnsemblSNAP91 - 6q14.2 [CytoView hg19]  SNAP91 - 6q14.2 [CytoView hg38]
Mapping of homologs : NCBISNAP91 [Mapview hg19]  SNAP91 [Mapview hg38]
OMIM607923   
Gene and transcription
Genbank (Entrez)AB014556 AF054993 AK289582 AK294556 AK294898
RefSeq transcript (Entrez)NM_001242792 NM_001242793 NM_001242794 NM_001256717 NM_001256718 NM_001363677 NM_014841
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNAP91
Cluster EST : UnigeneHs.368046 [ NCBI ]
CGAP (NCI)Hs.368046
Alternative Splicing GalleryENSG00000065609
Gene ExpressionSNAP91 [ NCBI-GEO ]   SNAP91 [ EBI - ARRAY_EXPRESS ]   SNAP91 [ SEEK ]   SNAP91 [ MEM ]
Gene Expression Viewer (FireBrowse)SNAP91 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9892
GTEX Portal (Tissue expression)SNAP91
Human Protein AtlasENSG00000065609-SNAP91 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60641   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60641  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60641
Splice isoforms : SwissVarO60641
PhosPhoSitePlusO60641
Domaine pattern : Prosite (Expaxy)ENTH (PS50942)   
Domains : Interpro (EBI)ANTH_dom    Clathrin_AP_dom2    ENTH    ENTH_VHS   
Domain families : Pfam (Sanger)ANTH (PF07651)   
Domain families : Pfam (NCBI)pfam07651   
Domain families : Smart (EMBL)ENTH (SM00273)  
Conserved Domain (NCBI)SNAP91
DMDM Disease mutations9892
Blocks (Seattle)SNAP91
SuperfamilyO60641
Human Protein Atlas [tissue]ENSG00000065609-SNAP91 [tissue]
Peptide AtlasO60641
HPRD06391
IPIIPI00006612   IPI00646376   IPI00639862   IPI00966434   IPI00470905   IPI00973852   IPI00979112   IPI00984337   IPI01011465   IPI00980732   IPI00982795   IPI00983753   IPI00976484   IPI00975977   IPI00979773   
Protein Interaction databases
DIP (DOE-UCLA)O60641
IntAct (EBI)O60641
FunCoupENSG00000065609
BioGRIDSNAP91
STRING (EMBL)SNAP91
ZODIACSNAP91
Ontologies - Pathways
QuickGOO60641
Ontology : AmiGOprotein binding  1-phosphatidylinositol binding  plasma membrane  clathrin-coated pit  protein transport  protein kinase binding  clathrin-coated vesicle  clathrin binding  clathrin coat assembly  regulation of clathrin-dependent endocytosis  
Ontology : EGO-EBIprotein binding  1-phosphatidylinositol binding  plasma membrane  clathrin-coated pit  protein transport  protein kinase binding  clathrin-coated vesicle  clathrin binding  clathrin coat assembly  regulation of clathrin-dependent endocytosis  
NDEx NetworkSNAP91
Atlas of Cancer Signalling NetworkSNAP91
Wikipedia pathwaysSNAP91
Orthology - Evolution
OrthoDB9892
GeneTree (enSembl)ENSG00000065609
Phylogenetic Trees/Animal Genes : TreeFamSNAP91
HOVERGENO60641
HOGENOMO60641
Homologs : HomoloGeneSNAP91
Homology/Alignments : Family Browser (UCSC)SNAP91
Gene fusions - Rearrangements
Fusion : MitelmanME1/SNAP91 [6q14.2/6q14.2]  [t(6;6)(q14;q14)]  
Fusion : MitelmanSNAP91/SMPX [6q14.2/Xp22.12]  [t(X;6)(p22;q14)]  
Fusion PortalME1 6q14.2 SNAP91 6q14.2 LUSC
Fusion PortalSNAP91 6q14.2 SMPX Xp22.12 PRAD
Fusion : QuiverSNAP91
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNAP91 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNAP91
dbVarSNAP91
ClinVarSNAP91
1000_GenomesSNAP91 
Exome Variant ServerSNAP91
ExAC (Exome Aggregation Consortium)ENSG00000065609
GNOMAD BrowserENSG00000065609
Varsome BrowserSNAP91
Genetic variants : HAPMAP9892
Genomic Variants (DGV)SNAP91 [DGVbeta]
DECIPHERSNAP91 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNAP91 
Mutations
ICGC Data PortalSNAP91 
TCGA Data PortalSNAP91 
Broad Tumor PortalSNAP91
OASIS PortalSNAP91 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNAP91  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNAP91
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNAP91
DgiDB (Drug Gene Interaction Database)SNAP91
DoCM (Curated mutations)SNAP91 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNAP91 (select a term)
intoGenSNAP91
Cancer3DSNAP91(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607923   
Orphanet
DisGeNETSNAP91
MedgenSNAP91
Genetic Testing Registry SNAP91
NextProtO60641 [Medical]
TSGene9892
GENETestsSNAP91
Target ValidationSNAP91
Huge Navigator SNAP91 [HugePedia]
snp3D : Map Gene to Disease9892
BioCentury BCIQSNAP91
ClinGenSNAP91
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9892
Chemical/Pharm GKB GenePA37956
Clinical trialSNAP91
Miscellaneous
canSAR (ICR)SNAP91 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNAP91
EVEXSNAP91
GoPubMedSNAP91
iHOPSNAP91
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:40:45 CET 2018

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