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SNAPC1 (small nuclear RNA activating complex polypeptide 1)

Identity

Alias_namessmall nuclear RNA activating complex, polypeptide 1, 43kD
small nuclear RNA activating complex, polypeptide 1, 43kDa
Alias_symbol (synonym)SNAP43
PTFgamma
Other alias
HGNC (Hugo) SNAPC1
LocusID (NCBI) 6617
Atlas_Id 73601
Location 14q23.2  [Link to chromosome band 14q23]
Location_base_pair Starts at 61762357 and ends at 61796428 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
JUP (17q21.2) / SNAPC1 (14q23.2)SNAPC1 (14q23.2) / RP11-47I22.3 ()SNAPC1 (14q23.2) / SNAPC1 (14q23.2)
TMEM38A (19p13.11) / SNAPC1 (14q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNAPC1   11134
Cards
Entrez_Gene (NCBI)SNAPC1  6617  small nuclear RNA activating complex polypeptide 1
AliasesPTFgamma; SNAP43
GeneCards (Weizmann)SNAPC1
Ensembl hg19 (Hinxton)ENSG00000023608 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000023608 [Gene_View]  chr14:61762357-61796428 [Contig_View]  SNAPC1 [Vega]
ICGC DataPortalENSG00000023608
TCGA cBioPortalSNAPC1
AceView (NCBI)SNAPC1
Genatlas (Paris)SNAPC1
WikiGenes6617
SOURCE (Princeton)SNAPC1
Genetics Home Reference (NIH)SNAPC1
Genomic and cartography
GoldenPath hg38 (UCSC)SNAPC1  -     chr14:61762357-61796428 +  14q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNAPC1  -     14q23.2   [Description]    (hg19-Feb_2009)
EnsemblSNAPC1 - 14q23.2 [CytoView hg19]  SNAPC1 - 14q23.2 [CytoView hg38]
Mapping of homologs : NCBISNAPC1 [Mapview hg19]  SNAPC1 [Mapview hg38]
OMIM600591   
Gene and transcription
Genbank (Entrez)AK314933 BC014984 BC019038 DQ892683 DQ895926
RefSeq transcript (Entrez)NM_003082
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNAPC1
Cluster EST : UnigeneHs.179312 [ NCBI ]
CGAP (NCI)Hs.179312
Alternative Splicing GalleryENSG00000023608
Gene ExpressionSNAPC1 [ NCBI-GEO ]   SNAPC1 [ EBI - ARRAY_EXPRESS ]   SNAPC1 [ SEEK ]   SNAPC1 [ MEM ]
Gene Expression Viewer (FireBrowse)SNAPC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6617
GTEX Portal (Tissue expression)SNAPC1
Human Protein AtlasENSG00000023608-SNAPC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16533   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16533  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16533
Splice isoforms : SwissVarQ16533
PhosPhoSitePlusQ16533
Domains : Interpro (EBI)SNAPc_SNAP43   
Domain families : Pfam (Sanger)SNAPc_SNAP43 (PF09808)   
Domain families : Pfam (NCBI)pfam09808   
Conserved Domain (NCBI)SNAPC1
DMDM Disease mutations6617
Blocks (Seattle)SNAPC1
SuperfamilyQ16533
Human Protein Atlas [tissue]ENSG00000023608-SNAPC1 [tissue]
Peptide AtlasQ16533
HPRD08998
IPIIPI00002848   
Protein Interaction databases
DIP (DOE-UCLA)Q16533
IntAct (EBI)Q16533
FunCoupENSG00000023608
BioGRIDSNAPC1
STRING (EMBL)SNAPC1
ZODIACSNAPC1
Ontologies - Pathways
QuickGOQ16533
Ontology : AmiGOnucleoplasm  nucleoplasm  regulation of transcription, DNA-templated  snRNA-activating protein complex  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase III promoter  sequence-specific DNA binding  
Ontology : EGO-EBInucleoplasm  nucleoplasm  regulation of transcription, DNA-templated  snRNA-activating protein complex  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase III promoter  sequence-specific DNA binding  
NDEx NetworkSNAPC1
Atlas of Cancer Signalling NetworkSNAPC1
Wikipedia pathwaysSNAPC1
Orthology - Evolution
OrthoDB6617
GeneTree (enSembl)ENSG00000023608
Phylogenetic Trees/Animal Genes : TreeFamSNAPC1
HOVERGENQ16533
HOGENOMQ16533
Homologs : HomoloGeneSNAPC1
Homology/Alignments : Family Browser (UCSC)SNAPC1
Gene fusions - Rearrangements
Tumor Fusion PortalSNAPC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNAPC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNAPC1
dbVarSNAPC1
ClinVarSNAPC1
1000_GenomesSNAPC1 
Exome Variant ServerSNAPC1
ExAC (Exome Aggregation Consortium)ENSG00000023608
GNOMAD BrowserENSG00000023608
Genetic variants : HAPMAP6617
Genomic Variants (DGV)SNAPC1 [DGVbeta]
DECIPHERSNAPC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNAPC1 
Mutations
ICGC Data PortalSNAPC1 
TCGA Data PortalSNAPC1 
Broad Tumor PortalSNAPC1
OASIS PortalSNAPC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNAPC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNAPC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNAPC1
DgiDB (Drug Gene Interaction Database)SNAPC1
DoCM (Curated mutations)SNAPC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNAPC1 (select a term)
intoGenSNAPC1
Cancer3DSNAPC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600591   
Orphanet
DisGeNETSNAPC1
MedgenSNAPC1
Genetic Testing Registry SNAPC1
NextProtQ16533 [Medical]
TSGene6617
GENETestsSNAPC1
Target ValidationSNAPC1
Huge Navigator SNAPC1 [HugePedia]
snp3D : Map Gene to Disease6617
BioCentury BCIQSNAPC1
ClinGenSNAPC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6617
Chemical/Pharm GKB GenePA35982
Clinical trialSNAPC1
Miscellaneous
canSAR (ICR)SNAPC1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNAPC1
EVEXSNAPC1
GoPubMedSNAPC1
iHOPSNAPC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:30:29 CET 2017

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