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SNAPC2 (small nuclear RNA activating complex polypeptide 2)

Identity

Alias_namessmall nuclear RNA activating complex, polypeptide 2, 45kD
small nuclear RNA activating complex, polypeptide 2, 45kDa
Alias_symbol (synonym)SNAP45
PTFdelta
Other aliasPTFDELTA
HGNC (Hugo) SNAPC2
LocusID (NCBI) 6618
Atlas_Id 73602
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7920309 and ends at 7923251 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNAPC2   11135
Cards
Entrez_Gene (NCBI)SNAPC2  6618  small nuclear RNA activating complex polypeptide 2
AliasesPTFDELTA; SNAP45
GeneCards (Weizmann)SNAPC2
Ensembl hg19 (Hinxton)ENSG00000104976 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104976 [Gene_View]  chr19:7920309-7923251 [Contig_View]  SNAPC2 [Vega]
ICGC DataPortalENSG00000104976
TCGA cBioPortalSNAPC2
AceView (NCBI)SNAPC2
Genatlas (Paris)SNAPC2
WikiGenes6618
SOURCE (Princeton)SNAPC2
Genetics Home Reference (NIH)SNAPC2
Genomic and cartography
GoldenPath hg38 (UCSC)SNAPC2  -     chr19:7920309-7923251 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNAPC2  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblSNAPC2 - 19p13.2 [CytoView hg19]  SNAPC2 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBISNAPC2 [Mapview hg19]  SNAPC2 [Mapview hg38]
OMIM605076   
Gene and transcription
Genbank (Entrez)AK222926 AK314878 BC011868 BP234322 BX647416
RefSeq transcript (Entrez)NM_003083
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNAPC2
Cluster EST : UnigeneHs.631860 [ NCBI ]
CGAP (NCI)Hs.631860
Alternative Splicing GalleryENSG00000104976
Gene ExpressionSNAPC2 [ NCBI-GEO ]   SNAPC2 [ EBI - ARRAY_EXPRESS ]   SNAPC2 [ SEEK ]   SNAPC2 [ MEM ]
Gene Expression Viewer (FireBrowse)SNAPC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6618
GTEX Portal (Tissue expression)SNAPC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13487   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13487  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13487
Splice isoforms : SwissVarQ13487
PhosPhoSitePlusQ13487
Domains : Interpro (EBI)SnAPC_su2-like   
Domain families : Pfam (Sanger)SnAPC_2_like (PF11035)   
Domain families : Pfam (NCBI)pfam11035   
Conserved Domain (NCBI)SNAPC2
DMDM Disease mutations6618
Blocks (Seattle)SNAPC2
SuperfamilyQ13487
Human Protein AtlasENSG00000104976
Peptide AtlasQ13487
HPRD05464
IPIIPI00013406   IPI00873327   IPI00983767   
Protein Interaction databases
DIP (DOE-UCLA)Q13487
IntAct (EBI)Q13487
FunCoupENSG00000104976
BioGRIDSNAPC2
STRING (EMBL)SNAPC2
ZODIACSNAPC2
Ontologies - Pathways
QuickGOQ13487
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  nucleoplasm  cytosol  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription from RNA polymerase III promoter  snRNA transcription  nuclear body  snRNA transcription from RNA polymerase II promoter  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  nucleoplasm  cytosol  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription from RNA polymerase III promoter  snRNA transcription  nuclear body  snRNA transcription from RNA polymerase II promoter  
NDEx NetworkSNAPC2
Atlas of Cancer Signalling NetworkSNAPC2
Wikipedia pathwaysSNAPC2
Orthology - Evolution
OrthoDB6618
GeneTree (enSembl)ENSG00000104976
Phylogenetic Trees/Animal Genes : TreeFamSNAPC2
HOVERGENQ13487
HOGENOMQ13487
Homologs : HomoloGeneSNAPC2
Homology/Alignments : Family Browser (UCSC)SNAPC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNAPC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNAPC2
dbVarSNAPC2
ClinVarSNAPC2
1000_GenomesSNAPC2 
Exome Variant ServerSNAPC2
ExAC (Exome Aggregation Consortium)SNAPC2 (select the gene name)
Genetic variants : HAPMAP6618
Genomic Variants (DGV)SNAPC2 [DGVbeta]
DECIPHERSNAPC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNAPC2 
Mutations
ICGC Data PortalSNAPC2 
TCGA Data PortalSNAPC2 
Broad Tumor PortalSNAPC2
OASIS PortalSNAPC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNAPC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNAPC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNAPC2
DgiDB (Drug Gene Interaction Database)SNAPC2
DoCM (Curated mutations)SNAPC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNAPC2 (select a term)
intoGenSNAPC2
Cancer3DSNAPC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605076   
Orphanet
MedgenSNAPC2
Genetic Testing Registry SNAPC2
NextProtQ13487 [Medical]
TSGene6618
GENETestsSNAPC2
Target ValidationSNAPC2
Huge Navigator SNAPC2 [HugePedia]
snp3D : Map Gene to Disease6618
BioCentury BCIQSNAPC2
ClinGenSNAPC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6618
Chemical/Pharm GKB GenePA35983
Clinical trialSNAPC2
Miscellaneous
canSAR (ICR)SNAPC2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNAPC2
EVEXSNAPC2
GoPubMedSNAPC2
iHOPSNAPC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:52 CEST 2017

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