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SNAPC3 (small nuclear RNA activating complex polypeptide 3)

Identity

Alias_namessmall nuclear RNA activating complex, polypeptide 3, 50kD
small nuclear RNA activating complex, polypeptide 3, 50kDa
Alias_symbol (synonym)SNAP50
PTFbeta
MGC33124
MGC132011
Other alias
HGNC (Hugo) SNAPC3
LocusID (NCBI) 6619
Atlas_Id 73603
Location 9p22.3  [Link to chromosome band 9p22]
Location_base_pair Starts at 15422784 and ends at 15461629 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NAA50 (3q13.2) / SNAPC3 (9p22.3)SNAPC3 (9p22.3) / ADAMTSL1 (9p22.2)SNAPC3 (9p22.3) / MAP3K7CL (21q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNAPC3   11136
Cards
Entrez_Gene (NCBI)SNAPC3  6619  small nuclear RNA activating complex polypeptide 3
AliasesPTFbeta; SNAP50
GeneCards (Weizmann)SNAPC3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:15422784-15461629 [Contig_View]  SNAPC3 [Vega]
TCGA cBioPortalSNAPC3
AceView (NCBI)SNAPC3
Genatlas (Paris)SNAPC3
WikiGenes6619
SOURCE (Princeton)SNAPC3
Genetics Home Reference (NIH)SNAPC3
Genomic and cartography
GoldenPath hg38 (UCSC)SNAPC3  -     chr9:15422784-15461629 +  9p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNAPC3  -     9p22.3   [Description]    (hg19-Feb_2009)
EnsemblSNAPC3 - 9p22.3 [CytoView hg19]  SNAPC3 - 9p22.3 [CytoView hg38]
Mapping of homologs : NCBISNAPC3 [Mapview hg19]  SNAPC3 [Mapview hg38]
OMIM602348   
Gene and transcription
Genbank (Entrez)AK293310 BC014985 BC036031 BC108743 BC121011
RefSeq transcript (Entrez)NM_001039697 NM_003084
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNAPC3
Cluster EST : UnigeneHs.546299 [ NCBI ]
CGAP (NCI)Hs.546299
Gene ExpressionSNAPC3 [ NCBI-GEO ]   SNAPC3 [ EBI - ARRAY_EXPRESS ]   SNAPC3 [ SEEK ]   SNAPC3 [ MEM ]
Gene Expression Viewer (FireBrowse)SNAPC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6619
GTEX Portal (Tissue expression)SNAPC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92966   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92966  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92966
Splice isoforms : SwissVarQ92966
PhosPhoSitePlusQ92966
Domains : Interpro (EBI)snRNA-activating_su3   
Domain families : Pfam (Sanger)zf-SNAP50_C (PF12251)   
Domain families : Pfam (NCBI)pfam12251   
Conserved Domain (NCBI)SNAPC3
DMDM Disease mutations6619
Blocks (Seattle)SNAPC3
SuperfamilyQ92966
Peptide AtlasQ92966
HPRD03826
IPIIPI00024346   IPI00909175   IPI00640843   IPI00515084   
Protein Interaction databases
DIP (DOE-UCLA)Q92966
IntAct (EBI)Q92966
BioGRIDSNAPC3
STRING (EMBL)SNAPC3
ZODIACSNAPC3
Ontologies - Pathways
QuickGOQ92966
Ontology : AmiGODNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  nucleolus  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription from RNA polymerase III promoter  snRNA transcription  nuclear body  snRNA transcription from RNA polymerase II promoter  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  nucleolus  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription from RNA polymerase III promoter  snRNA transcription  nuclear body  snRNA transcription from RNA polymerase II promoter  
NDEx NetworkSNAPC3
Atlas of Cancer Signalling NetworkSNAPC3
Wikipedia pathwaysSNAPC3
Orthology - Evolution
OrthoDB6619
Phylogenetic Trees/Animal Genes : TreeFamSNAPC3
HOVERGENQ92966
HOGENOMQ92966
Homologs : HomoloGeneSNAPC3
Homology/Alignments : Family Browser (UCSC)SNAPC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNAPC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNAPC3
dbVarSNAPC3
ClinVarSNAPC3
1000_GenomesSNAPC3 
Exome Variant ServerSNAPC3
ExAC (Exome Aggregation Consortium)SNAPC3 (select the gene name)
Genetic variants : HAPMAP6619
Genomic Variants (DGV)SNAPC3 [DGVbeta]
DECIPHERSNAPC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNAPC3 
Mutations
ICGC Data PortalSNAPC3 
TCGA Data PortalSNAPC3 
Broad Tumor PortalSNAPC3
OASIS PortalSNAPC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNAPC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNAPC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNAPC3
DgiDB (Drug Gene Interaction Database)SNAPC3
DoCM (Curated mutations)SNAPC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNAPC3 (select a term)
intoGenSNAPC3
Cancer3DSNAPC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602348   
Orphanet
MedgenSNAPC3
Genetic Testing Registry SNAPC3
NextProtQ92966 [Medical]
TSGene6619
GENETestsSNAPC3
Target ValidationSNAPC3
Huge Navigator SNAPC3 [HugePedia]
snp3D : Map Gene to Disease6619
BioCentury BCIQSNAPC3
ClinGenSNAPC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6619
Chemical/Pharm GKB GenePA35984
Clinical trialSNAPC3
Miscellaneous
canSAR (ICR)SNAPC3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNAPC3
EVEXSNAPC3
GoPubMedSNAPC3
iHOPSNAPC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:36 CEST 2017

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