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SNAPC4 (small nuclear RNA activating complex, polypeptide 4, 190kDa)

Identity

Alias_namessmall nuclear RNA activating complex, polypeptide 4, 190kD
small nuclear RNA activating complex, polypeptide 4, 190kDa
Alias_symbol (synonym)SNAP190
PTFalpha
FLJ13451
Other alias
HGNC (Hugo) SNAPC4
LocusID (NCBI) 6621
Atlas_Id 73604
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 139270029 and ends at 139292889 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SNAPC4 (9q34.3) / CYP27A1 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNAPC4   11137
Cards
Entrez_Gene (NCBI)SNAPC4  6621  small nuclear RNA activating complex, polypeptide 4, 190kDa
AliasesPTFalpha; SNAP190
GeneCards (Weizmann)SNAPC4
Ensembl hg19 (Hinxton)ENSG00000165684 [Gene_View]  chr9:139270029-139292889 [Contig_View]  SNAPC4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165684 [Gene_View]  chr9:139270029-139292889 [Contig_View]  SNAPC4 [Vega]
ICGC DataPortalENSG00000165684
TCGA cBioPortalSNAPC4
AceView (NCBI)SNAPC4
Genatlas (Paris)SNAPC4
WikiGenes6621
SOURCE (Princeton)SNAPC4
Genetics Home Reference (NIH)SNAPC4
Genomic and cartography
GoldenPath hg19 (UCSC)SNAPC4  -     chr9:139270029-139292889 -  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNAPC4  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblSNAPC4 - 9q34.3 [CytoView hg19]  SNAPC4 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBISNAPC4 [Mapview hg19]  SNAPC4 [Mapview hg38]
OMIM602777   
Gene and transcription
Genbank (Entrez)AF032387 AK023513 BC013606 BC172433 CT003125
RefSeq transcript (Entrez)NM_003086
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)SNAPC4
Cluster EST : UnigeneHs.113265 [ NCBI ]
CGAP (NCI)Hs.113265
Alternative Splicing GalleryENSG00000165684
Gene ExpressionSNAPC4 [ NCBI-GEO ]   SNAPC4 [ EBI - ARRAY_EXPRESS ]   SNAPC4 [ SEEK ]   SNAPC4 [ MEM ]
Gene Expression Viewer (FireBrowse)SNAPC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6621
GTEX Portal (Tissue expression)SNAPC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SXM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SXM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SXM2
Splice isoforms : SwissVarQ5SXM2
PhosPhoSitePlusQ5SXM2
Domaine pattern : Prosite (Expaxy)HTH_MYB (PS51294)    MYB_LIKE (PS50090)   
Domains : Interpro (EBI)Homeodomain-like    Myb-like_dom    Myb_dom    SANT/Myb   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)SNAPC4
DMDM Disease mutations6621
Blocks (Seattle)SNAPC4
SuperfamilyQ5SXM2
Human Protein AtlasENSG00000165684
Peptide AtlasQ5SXM2
HPRD04146
IPIIPI00158992   IPI00980948   
Protein Interaction databases
DIP (DOE-UCLA)Q5SXM2
IntAct (EBI)Q5SXM2
FunCoupENSG00000165684
BioGRIDSNAPC4
STRING (EMBL)SNAPC4
ZODIACSNAPC4
Ontologies - Pathways
QuickGOQ5SXM2
Ontology : AmiGODNA binding  chromatin binding  sequence-specific DNA binding transcription factor activity  nucleus  nucleoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription from RNA polymerase III promoter  snRNA transcription  gene expression  snRNA-activating protein complex  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase III promoter  
Ontology : EGO-EBIDNA binding  chromatin binding  sequence-specific DNA binding transcription factor activity  nucleus  nucleoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription from RNA polymerase III promoter  snRNA transcription  gene expression  snRNA-activating protein complex  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase III promoter  
NDEx NetworkSNAPC4
Atlas of Cancer Signalling NetworkSNAPC4
Wikipedia pathwaysSNAPC4
Orthology - Evolution
OrthoDB6621
GeneTree (enSembl)ENSG00000165684
Phylogenetic Trees/Animal Genes : TreeFamSNAPC4
HOVERGENQ5SXM2
HOGENOMQ5SXM2
Homologs : HomoloGeneSNAPC4
Homology/Alignments : Family Browser (UCSC)SNAPC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNAPC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNAPC4
dbVarSNAPC4
ClinVarSNAPC4
1000_GenomesSNAPC4 
Exome Variant ServerSNAPC4
ExAC (Exome Aggregation Consortium)SNAPC4 (select the gene name)
Genetic variants : HAPMAP6621
Genomic Variants (DGV)SNAPC4 [DGVbeta]
DECIPHER (Syndromes)9:139270029-139292889  ENSG00000165684
CONAN: Copy Number AnalysisSNAPC4 
Mutations
ICGC Data PortalSNAPC4 
TCGA Data PortalSNAPC4 
Broad Tumor PortalSNAPC4
OASIS PortalSNAPC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNAPC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNAPC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNAPC4
DgiDB (Drug Gene Interaction Database)SNAPC4
DoCM (Curated mutations)SNAPC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNAPC4 (select a term)
intoGenSNAPC4
Cancer3DSNAPC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602777   
Orphanet
MedgenSNAPC4
Genetic Testing Registry SNAPC4
NextProtQ5SXM2 [Medical]
TSGene6621
GENETestsSNAPC4
Huge Navigator SNAPC4 [HugePedia]
snp3D : Map Gene to Disease6621
BioCentury BCIQSNAPC4
ClinGenSNAPC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6621
Chemical/Pharm GKB GenePA35985
Clinical trialSNAPC4
Miscellaneous
canSAR (ICR)SNAPC4 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNAPC4
EVEXSNAPC4
GoPubMedSNAPC4
iHOPSNAPC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:20 CET 2017

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