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SNAPC5 (small nuclear RNA activating complex polypeptide 5)

Identity

Alias_namessmall nuclear RNA activating complex, polypeptide 5, 19kD
small nuclear RNA activating complex, polypeptide 5, 19kDa
Alias_symbol (synonym)SNAP19
Other alias
HGNC (Hugo) SNAPC5
LocusID (NCBI) 10302
Atlas_Id 73605
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 66493468 and ends at 66497815 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BPIFB1 (20q11.21) / SNAPC5 (15q22.31)SNAPC5 (15q22.31) / BPIFB4 (20q11.21)ZKSCAN1 (7q22.1) / SNAPC5 (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNAPC5   15484
Cards
Entrez_Gene (NCBI)SNAPC5  10302  small nuclear RNA activating complex polypeptide 5
AliasesSNAP19
GeneCards (Weizmann)SNAPC5
Ensembl hg19 (Hinxton)ENSG00000174446 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174446 [Gene_View]  chr15:66493468-66497815 [Contig_View]  SNAPC5 [Vega]
ICGC DataPortalENSG00000174446
TCGA cBioPortalSNAPC5
AceView (NCBI)SNAPC5
Genatlas (Paris)SNAPC5
WikiGenes10302
SOURCE (Princeton)SNAPC5
Genetics Home Reference (NIH)SNAPC5
Genomic and cartography
GoldenPath hg38 (UCSC)SNAPC5  -     chr15:66493468-66497815 -  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNAPC5  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblSNAPC5 - 15q22.31 [CytoView hg19]  SNAPC5 - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBISNAPC5 [Mapview hg19]  SNAPC5 [Mapview hg38]
OMIM605979   
Gene and transcription
Genbank (Entrez)AF093593 AK024763 AK292051 AK312018 BC014315
RefSeq transcript (Entrez)NM_001329613 NM_001329614 NM_001329615 NM_006049
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNAPC5
Cluster EST : UnigeneHs.30174 [ NCBI ]
CGAP (NCI)Hs.#01744/!>
Alternative Splicing GalleryENSG00000174446
Gene ExpressionSNAPC5 [ NCBI-GEO ]   SNAPC5 [ EBI - ARRAY_EXPRESS ]   SNAPC5 [ SEEK ]   SNAPC5 [ MEM ]
Gene Expression Viewer (FireBrowse)SNAPC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10302
GTEX Portal (Tissue expression)SNAPC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75971   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75971  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75971
Splice isoforms : SwissVarO75971
PhosPhoSitePlusO75971
Domains : Interpro (EBI)SNAPC5   
Domain families : Pfam (Sanger)SNAPc19 (PF15497)   
Domain families : Pfam (NCBI)pfam15497   
Conserved Domain (NCBI)SNAPC5
DMDM Disease mutations10302
Blocks (Seattle)SNAPC5
SuperfamilyO75971
Human Protein AtlasENSG00000174446
Peptide AtlasO75971
HPRD16183
IPIIPI00027456   IPI00060415   
Protein Interaction databases
DIP (DOE-UCLA)O75971
IntAct (EBI)O75971
FunCoupENSG00000174446
BioGRIDSNAPC5
STRING (EMBL)SNAPC5
ZODIACSNAPC5
Ontologies - Pathways
QuickGOO75971
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  nucleolus  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase III promoter  nuclear body  snRNA transcription from RNA polymerase II promoter  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  nucleolus  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase III promoter  nuclear body  snRNA transcription from RNA polymerase II promoter  
NDEx NetworkSNAPC5
Atlas of Cancer Signalling NetworkSNAPC5
Wikipedia pathwaysSNAPC5
Orthology - Evolution
OrthoDB10302
GeneTree (enSembl)ENSG00000174446
Phylogenetic Trees/Animal Genes : TreeFamSNAPC5
HOVERGENO75971
HOGENOMO75971
Homologs : HomoloGeneSNAPC5
Homology/Alignments : Family Browser (UCSC)SNAPC5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNAPC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNAPC5
dbVarSNAPC5
ClinVarSNAPC5
1000_GenomesSNAPC5 
Exome Variant ServerSNAPC5
ExAC (Exome Aggregation Consortium)SNAPC5 (select the gene name)
Genetic variants : HAPMAP10302
Genomic Variants (DGV)SNAPC5 [DGVbeta]
DECIPHERSNAPC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNAPC5 
Mutations
ICGC Data PortalSNAPC5 
TCGA Data PortalSNAPC5 
Broad Tumor PortalSNAPC5
OASIS PortalSNAPC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNAPC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNAPC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNAPC5
DgiDB (Drug Gene Interaction Database)SNAPC5
DoCM (Curated mutations)SNAPC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNAPC5 (select a term)
intoGenSNAPC5
Cancer3DSNAPC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605979   
Orphanet
MedgenSNAPC5
Genetic Testing Registry SNAPC5
NextProtO75971 [Medical]
TSGene10302
GENETestsSNAPC5
Target ValidationSNAPC5
Huge Navigator SNAPC5 [HugePedia]
snp3D : Map Gene to Disease10302
BioCentury BCIQSNAPC5
ClinGenSNAPC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10302
Chemical/Pharm GKB GenePA37967
Clinical trialSNAPC5
Miscellaneous
canSAR (ICR)SNAPC5 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNAPC5
EVEXSNAPC5
GoPubMedSNAPC5
iHOPSNAPC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:37 CEST 2017

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