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SNCB (synuclein beta)

Identity

Other alias-
HGNC (Hugo) SNCB
LocusID (NCBI) 6620
Atlas_Id 51427
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 176620084 and ends at 176630561 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP1B2 (17p13.1) / SNCB (5q35.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNCB   11140
Cards
Entrez_Gene (NCBI)SNCB  6620  synuclein beta
Aliases
GeneCards (Weizmann)SNCB
Ensembl hg19 (Hinxton)ENSG00000074317 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000074317 [Gene_View]  chr5:176620084-176630561 [Contig_View]  SNCB [Vega]
ICGC DataPortalENSG00000074317
TCGA cBioPortalSNCB
AceView (NCBI)SNCB
Genatlas (Paris)SNCB
WikiGenes6620
SOURCE (Princeton)SNCB
Genetics Home Reference (NIH)SNCB
Genomic and cartography
GoldenPath hg38 (UCSC)SNCB  -     chr5:176620084-176630561 -  5q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNCB  -     5q35.2   [Description]    (hg19-Feb_2009)
EnsemblSNCB - 5q35.2 [CytoView hg19]  SNCB - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBISNCB [Mapview hg19]  SNCB [Mapview hg38]
OMIM127750   602569   
Gene and transcription
Genbank (Entrez)AB209029 AK309135 BC002902 BM543516 BM967045
RefSeq transcript (Entrez)NM_001001502 NM_001318034 NM_001318035 NM_001318036 NM_001318037 NM_003085
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNCB
Cluster EST : UnigeneHs.90297 [ NCBI ]
CGAP (NCI)Hs.90297
Alternative Splicing GalleryENSG00000074317
Gene ExpressionSNCB [ NCBI-GEO ]   SNCB [ EBI - ARRAY_EXPRESS ]   SNCB [ SEEK ]   SNCB [ MEM ]
Gene Expression Viewer (FireBrowse)SNCB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6620
GTEX Portal (Tissue expression)SNCB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16143   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16143  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16143
Splice isoforms : SwissVarQ16143
PhosPhoSitePlusQ16143
Domains : Interpro (EBI)Synuclein    Synuclein_beta   
Domain families : Pfam (Sanger)Synuclein (PF01387)   
Domain families : Pfam (NCBI)pfam01387   
Conserved Domain (NCBI)SNCB
DMDM Disease mutations6620
Blocks (Seattle)SNCB
SuperfamilyQ16143
Human Protein AtlasENSG00000074317
Peptide AtlasQ16143
HPRD03980
IPIIPI00032904   IPI00556279   
Protein Interaction databases
DIP (DOE-UCLA)Q16143
IntAct (EBI)Q16143
FunCoupENSG00000074317
BioGRIDSNCB
STRING (EMBL)SNCB
ZODIACSNCB
Ontologies - Pathways
QuickGOQ16143
Ontology : AmiGOphospholipase inhibitor activity  calcium ion binding  mitochondrion  chemical synaptic transmission  inclusion body  dopamine metabolic process  negative regulation of catalytic activity  negative regulation of neuron apoptotic process  synapse  transition metal ion binding  synapse organization  cuprous ion binding  
Ontology : EGO-EBIphospholipase inhibitor activity  calcium ion binding  mitochondrion  chemical synaptic transmission  inclusion body  dopamine metabolic process  negative regulation of catalytic activity  negative regulation of neuron apoptotic process  synapse  transition metal ion binding  synapse organization  cuprous ion binding  
NDEx NetworkSNCB
Atlas of Cancer Signalling NetworkSNCB
Wikipedia pathwaysSNCB
Orthology - Evolution
OrthoDB6620
GeneTree (enSembl)ENSG00000074317
Phylogenetic Trees/Animal Genes : TreeFamSNCB
HOVERGENQ16143
HOGENOMQ16143
Homologs : HomoloGeneSNCB
Homology/Alignments : Family Browser (UCSC)SNCB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNCB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNCB
dbVarSNCB
ClinVarSNCB
1000_GenomesSNCB 
Exome Variant ServerSNCB
ExAC (Exome Aggregation Consortium)SNCB (select the gene name)
Genetic variants : HAPMAP6620
Genomic Variants (DGV)SNCB [DGVbeta]
DECIPHERSNCB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNCB 
Mutations
ICGC Data PortalSNCB 
TCGA Data PortalSNCB 
Broad Tumor PortalSNCB
OASIS PortalSNCB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNCB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNCB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNCB
DgiDB (Drug Gene Interaction Database)SNCB
DoCM (Curated mutations)SNCB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNCB (select a term)
intoGenSNCB
Cancer3DSNCB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM127750    602569   
Orphanet
MedgenSNCB
Genetic Testing Registry SNCB
NextProtQ16143 [Medical]
TSGene6620
GENETestsSNCB
Target ValidationSNCB
Huge Navigator SNCB [HugePedia]
snp3D : Map Gene to Disease6620
BioCentury BCIQSNCB
ClinGenSNCB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6620
Chemical/Pharm GKB GenePA35988
Clinical trialSNCB
Miscellaneous
canSAR (ICR)SNCB (select the gene name)
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNCB
EVEXSNCB
GoPubMedSNCB
iHOPSNCB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:08:01 CEST 2017

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