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SND1-IT1 (SND1 intronic transcript 1)

Identity

Alias_namesC7orf54
chromosome 7 open reading frame 54
SND1 intronic transcript 1 (non-protein coding)
Alias_symbol (synonym)NAG8
NSG-X
Other alias
HGNC (Hugo) SND1-IT1
LocusID (NCBI) 27099
Atlas_Id 41586
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 127997802 and ends at 127999390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SND1-IT1   24158
Cards
Entrez_Gene (NCBI)SND1-IT1  27099  SND1 intronic transcript 1
AliasesC7orf54; NAG8; NSG-X
GeneCards (Weizmann)SND1-IT1
Ensembl hg19 (Hinxton)ENSG00000279078 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000279078 [Gene_View]  chr7:127997802-127999390 [Contig_View]  SND1-IT1 [Vega]
ICGC DataPortalENSG00000279078
TCGA cBioPortalSND1-IT1
AceView (NCBI)SND1-IT1
Genatlas (Paris)SND1-IT1
WikiGenes27099
SOURCE (Princeton)SND1-IT1
Genetics Home Reference (NIH)SND1-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)SND1-IT1  -     chr7:127997802-127999390 +  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SND1-IT1  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblSND1-IT1 - 7q32.1 [CytoView hg19]  SND1-IT1 - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBISND1-IT1 [Mapview hg19]  SND1-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF095687 AF191492 AK024176 BC093748 BC112141
RefSeq transcript (Entrez)NM_014411
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SND1-IT1
Cluster EST : UnigeneHs.657377 [ NCBI ]
CGAP (NCI)Hs.657377
Alternative Splicing GalleryENSG00000279078
Gene ExpressionSND1-IT1 [ NCBI-GEO ]   SND1-IT1 [ EBI - ARRAY_EXPRESS ]   SND1-IT1 [ SEEK ]   SND1-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SND1-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27099
GTEX Portal (Tissue expression)SND1-IT1
Human Protein AtlasENSG00000279078-SND1-IT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBX3
Splice isoforms : SwissVarQ9HBX3
PhosPhoSitePlusQ9HBX3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SND1-IT1
DMDM Disease mutations27099
Blocks (Seattle)SND1-IT1
SuperfamilyQ9HBX3
Human Protein Atlas [tissue]ENSG00000279078-SND1-IT1 [tissue]
Peptide AtlasQ9HBX3
HPRD18483
IPIIPI00004329   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBX3
IntAct (EBI)Q9HBX3
FunCoupENSG00000279078
BioGRIDSND1-IT1
STRING (EMBL)SND1-IT1
ZODIACSND1-IT1
Ontologies - Pathways
QuickGOQ9HBX3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSND1-IT1
Atlas of Cancer Signalling NetworkSND1-IT1
Wikipedia pathwaysSND1-IT1
Orthology - Evolution
OrthoDB27099
GeneTree (enSembl)ENSG00000279078
Phylogenetic Trees/Animal Genes : TreeFamSND1-IT1
HOVERGENQ9HBX3
HOGENOMQ9HBX3
Homologs : HomoloGeneSND1-IT1
Homology/Alignments : Family Browser (UCSC)SND1-IT1
Gene fusions - Rearrangements
Tumor Fusion PortalSND1-IT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSND1-IT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SND1-IT1
dbVarSND1-IT1
ClinVarSND1-IT1
1000_GenomesSND1-IT1 
Exome Variant ServerSND1-IT1
ExAC (Exome Aggregation Consortium)ENSG00000279078
GNOMAD BrowserENSG00000279078
Genetic variants : HAPMAP27099
Genomic Variants (DGV)SND1-IT1 [DGVbeta]
DECIPHERSND1-IT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSND1-IT1 
Mutations
ICGC Data PortalSND1-IT1 
TCGA Data PortalSND1-IT1 
Broad Tumor PortalSND1-IT1
OASIS PortalSND1-IT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSND1-IT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SND1-IT1
DgiDB (Drug Gene Interaction Database)SND1-IT1
DoCM (Curated mutations)SND1-IT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SND1-IT1 (select a term)
intoGenSND1-IT1
Cancer3DSND1-IT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSND1-IT1
MedgenSND1-IT1
Genetic Testing Registry SND1-IT1
NextProtQ9HBX3 [Medical]
TSGene27099
GENETestsSND1-IT1
Target ValidationSND1-IT1
Huge Navigator SND1-IT1 [HugePedia]
snp3D : Map Gene to Disease27099
BioCentury BCIQSND1-IT1
ClinGenSND1-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27099
Chemical/Pharm GKB GenePA162380606
Clinical trialSND1-IT1
Miscellaneous
canSAR (ICR)SND1-IT1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSND1-IT1
EVEXSND1-IT1
GoPubMedSND1-IT1
iHOPSND1-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:35:46 CET 2017

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