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SND1 (staphylococcal nuclease and tudor domain containing 1)

Identity

Alias_symbol (synonym)TDRD11
p100
Other aliasTudor-SN
HGNC (Hugo) SND1
LocusID (NCBI) 27044
Atlas_Id 49890
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 127651989 and ends at 128092609 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AHCYL2 (7q32.1) / SND1 (7q32.1)APOA2 (1q23.3) / SND1 (7q32.1)BRAF (7q34) / SND1 (7q32.1)
CD63 (12q13.2) / SND1 (7q32.1)DMBT1 (10q26.13) / SND1 (7q32.1)HNRNPAB (5q35.3) / SND1 (7q32.1)
KDM7A (7q34) / SND1 (7q32.1)KIDINS220 (2p25.1) / SND1 (7q32.1)KPNA3 (13q14.2) / SND1 (7q32.1)
MOSPD2 (Xp22.2) / SND1 (7q32.1)NDUFA5 (7q31.32) / SND1 (7q32.1)PDE8A (15q25.3) / SND1 (7q32.1)
PTPRZ1 (7q31.32) / SND1 (7q32.1)SND1 (7q32.1) / BET1L (11p15.5)SND1 (7q32.1) / BRAF (7q34)
SND1 (7q32.1) / CFTR (7q31.2)SND1 (7q32.1) / GRM8 (7q31.33)SND1 (7q32.1) / KRT18 (12q13.13)
SND1 (7q32.1) / MIR548AI (14q12)SND1 (7q32.1) / MYOG (1q32.1)SND1 (7q32.1) / NRXN3 (14q31.1)
SND1 (7q32.1) / SMURF2 (17q23.3)SND1 (7q32.1) / SND1 (7q32.1)SND1 (7q32.1) / SPTBN1 (2p16.2)
SND1 (7q32.1) / USP25 (21q21.1)TOP1MT (8q24.3) / SND1 (7q32.1)UBE2D2 (5q31.2) / SND1 (7q32.1)
ZFR (5p13.3) / SND1 (7q32.1)ZNF800 (7q31.33) / SND1 (7q32.1)SND1 7q32.1 BRAF
AHCYL2 7q32.1 / SND1 7q32.1BRAF 7q34 / SND1 7q32.1JHDM1D SND1 7q32.1
SND1 7q32.1 / BRAF 7q34SND1 7q32.1 / GRM8 7q31.33UBE2D2 5q31.2 / SND1 7q32.1
ZFR 5p13.3 / SND1 7q32.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SND1   30646
Cards
Entrez_Gene (NCBI)SND1  27044  staphylococcal nuclease and tudor domain containing 1
AliasesTDRD11; Tudor-SN; p100
GeneCards (Weizmann)SND1
Ensembl hg19 (Hinxton)ENSG00000197157 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197157 [Gene_View]  chr7:127651989-128092609 [Contig_View]  SND1 [Vega]
ICGC DataPortalENSG00000197157
TCGA cBioPortalSND1
AceView (NCBI)SND1
Genatlas (Paris)SND1
WikiGenes27044
SOURCE (Princeton)SND1
Genetics Home Reference (NIH)SND1
Genomic and cartography
GoldenPath hg38 (UCSC)SND1  -     chr7:127651989-128092609 +  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SND1  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblSND1 - 7q32.1 [CytoView hg19]  SND1 - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBISND1 [Mapview hg19]  SND1 [Mapview hg38]
OMIM602181   
Gene and transcription
Genbank (Entrez)AB209510 AK096583 AK304181 AK309014 AK312313
RefSeq transcript (Entrez)NM_014390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SND1
Cluster EST : UnigeneHs.122523 [ NCBI ]
CGAP (NCI)Hs.122523
Alternative Splicing GalleryENSG00000197157
Gene ExpressionSND1 [ NCBI-GEO ]   SND1 [ EBI - ARRAY_EXPRESS ]   SND1 [ SEEK ]   SND1 [ MEM ]
Gene Expression Viewer (FireBrowse)SND1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27044
GTEX Portal (Tissue expression)SND1
Human Protein AtlasENSG00000197157-SND1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7KZF4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7KZF4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7KZF4
Splice isoforms : SwissVarQ7KZF4
PhosPhoSitePlusQ7KZF4
Domaine pattern : Prosite (Expaxy)TNASE_2 (PS01284)    TNASE_3 (PS50830)    TUDOR (PS50304)   
Domains : Interpro (EBI)Silence_cplx_Nase-comp_TudorSN    Staphylococal_nuclease_OB-fold    Thermonucl_AS    Tudor   
Domain families : Pfam (Sanger)SNase (PF00565)    TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam00565    pfam00567   
Domain families : Smart (EMBL)SNc (SM00318)  TUDOR (SM00333)  
Conserved Domain (NCBI)SND1
DMDM Disease mutations27044
Blocks (Seattle)SND1
PDB (SRS)2E6N    2HQE    2HQX    2O4X    3BDL    3OMC    3OMG    4QMG    5M9O   
PDB (PDBSum)2E6N    2HQE    2HQX    2O4X    3BDL    3OMC    3OMG    4QMG    5M9O   
PDB (IMB)2E6N    2HQE    2HQX    2O4X    3BDL    3OMC    3OMG    4QMG    5M9O   
PDB (RSDB)2E6N    2HQE    2HQX    2O4X    3BDL    3OMC    3OMG    4QMG    5M9O   
Structural Biology KnowledgeBase2E6N    2HQE    2HQX    2O4X    3BDL    3OMC    3OMG    4QMG    5M9O   
SCOP (Structural Classification of Proteins)2E6N    2HQE    2HQX    2O4X    3BDL    3OMC    3OMG    4QMG    5M9O   
CATH (Classification of proteins structures)2E6N    2HQE    2HQX    2O4X    3BDL    3OMC    3OMG    4QMG    5M9O   
SuperfamilyQ7KZF4
Human Protein Atlas [tissue]ENSG00000197157-SND1 [tissue]
Peptide AtlasQ7KZF4
HPRD03714
IPIIPI00140420   IPI00910438   IPI01009513   IPI00945024   
Protein Interaction databases
DIP (DOE-UCLA)Q7KZF4
IntAct (EBI)Q7KZF4
FunCoupENSG00000197157
BioGRIDSND1
STRING (EMBL)SND1
ZODIACSND1
Ontologies - Pathways
QuickGOQ7KZF4
Ontology : AmiGOosteoblast differentiation  transcription cofactor activity  RNA binding  nuclease activity  protein binding  nucleus  cytoplasm  mitochondrion  cytosol  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  RNA catabolic process  membrane  viral process  RISC complex  gene silencing by RNA  melanosome  cadherin binding  extracellular exosome  nucleic acid phosphodiester bond hydrolysis  dense body  
Ontology : EGO-EBIosteoblast differentiation  transcription cofactor activity  RNA binding  nuclease activity  protein binding  nucleus  cytoplasm  mitochondrion  cytosol  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  RNA catabolic process  membrane  viral process  RISC complex  gene silencing by RNA  melanosome  cadherin binding  extracellular exosome  nucleic acid phosphodiester bond hydrolysis  dense body  
Pathways : KEGGEpstein-Barr virus infection    Viral carcinogenesis   
NDEx NetworkSND1
Atlas of Cancer Signalling NetworkSND1
Wikipedia pathwaysSND1
Orthology - Evolution
OrthoDB27044
GeneTree (enSembl)ENSG00000197157
Phylogenetic Trees/Animal Genes : TreeFamSND1
HOVERGENQ7KZF4
HOGENOMQ7KZF4
Homologs : HomoloGeneSND1
Homology/Alignments : Family Browser (UCSC)SND1
Gene fusions - Rearrangements
Fusion : MitelmanAHCYL2/SND1 [7q32.1/7q32.1]  [t(7;7)(q32;q32)]  
Fusion : MitelmanBRAF/SND1 [7q34/7q32.1]  [t(7;7)(q32;q34)]  
Fusion : MitelmanKDM7A/SND1 [7q34/7q32.1]  [t(7;7)(q32;q34)]  
Fusion : MitelmanSND1/BRAF [7q32.1/7q34]  [t(7;7)(q32;q34)]  
Fusion : MitelmanSND1/GRM8 [7q32.1/7q31.33]  [t(7;7)(q31;q32)]  
Fusion : MitelmanUBE2D2/SND1 [5q31.2/7q32.1]  [t(5;7)(q31;q32)]  
Fusion : MitelmanZFR/SND1 [5p13.3/7q32.1]  [t(5;7)(p13;q32)]  
Fusion: TCGAAHCYL2 7q32.1 SND1 7q32.1 PRAD
Fusion: TCGABRAF 7q34 SND1 7q32.1 THCA
Fusion: TCGAJHDM1D SND1 7q32.1 BRCA
Fusion: TCGASND1 7q32.1 BRAF 7q34 THCA
Fusion: TCGASND1 7q32.1 GRM8 7q31.33 BRCA
Fusion: TCGAUBE2D2 5q31.2 SND1 7q32.1 LUAD
Fusion: TCGAZFR 5p13.3 SND1 7q32.1 OV
Fusion: Tumor Portal SND1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSND1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SND1
dbVarSND1
ClinVarSND1
1000_GenomesSND1 
Exome Variant ServerSND1
ExAC (Exome Aggregation Consortium)ENSG00000197157
GNOMAD BrowserENSG00000197157
Genetic variants : HAPMAP27044
Genomic Variants (DGV)SND1 [DGVbeta]
DECIPHERSND1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSND1 
Mutations
ICGC Data PortalSND1 
TCGA Data PortalSND1 
Broad Tumor PortalSND1
OASIS PortalSND1 [ Somatic mutations - Copy number]
Cancer Gene: CensusSND1 
Somatic Mutations in Cancer : COSMICSND1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSND1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SND1
DgiDB (Drug Gene Interaction Database)SND1
DoCM (Curated mutations)SND1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SND1 (select a term)
intoGenSND1
Cancer3DSND1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602181   
Orphanet
MedgenSND1
Genetic Testing Registry SND1
NextProtQ7KZF4 [Medical]
TSGene27044
GENETestsSND1
Target ValidationSND1
Huge Navigator SND1 [HugePedia]
snp3D : Map Gene to Disease27044
BioCentury BCIQSND1
ClinGenSND1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27044
Chemical/Pharm GKB GenePA162404053
Clinical trialSND1
Miscellaneous
canSAR (ICR)SND1 (select the gene name)
Probes
Litterature
PubMed100 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSND1
EVEXSND1
GoPubMedSND1
iHOPSND1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:11:56 CET 2017

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