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SNHG1 (small nucleolar RNA host gene 1)

Identity

Alias (NCBI)LINC00057
NCRNA00057
U22HG
UHG
lncRNA16
HGNC (Hugo) SNHG1
HGNC Alias symbUHG
NCRNA00057
LINC00057
lncRNA16
HGNC Alias nameU22 snoRNA host gene
 non-protein coding RNA 57
 long intergenic non-protein coding RNA 57
HGNC Previous namesmall nucleolar RNA host gene 1 (non-protein coding)
LocusID (NCBI) 23642
Atlas_Id 55444
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62851978 and ends at 62855885 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KCNQ4 (1p34.2) / SNHG1 (11q12.3)NECTIN1 (11q23.3) / SNHG1 (11q12.3)RHOT1 (17q11.2) / SNHG1 (11q12.3)
SLC50A1 (1q22) / SNHG1 (11q12.3)SNHG1 (11q12.3) / ACTB (7p22.1)SNHG1 (11q12.3) / EEF1A1 (6q13)
SNHG1 (11q12.3) / EHD1 (11q13.1)SNHG1 (11q12.3) / FEZ1 (11q24.2)SNHG1 (11q12.3) / GDI1 (Xq28)
SNHG1 (11q12.3) / GHITM (10q23.1)SNHG1 (11q12.3) / HLA-G (6p22.1)SNHG1 (11q12.3) / LDB3 (10q23.2)
SNHG1 (11q12.3) / SEC61A1 (3q21.3)SNHG1 (11q12.3) / SLC27A5 (19q13.43)SNHG1 (11q12.3) / SNHG1 (11q12.3)
SNHG1 (11q12.3) / SNX2 (5q23.2)SNHG1 (11q12.3) / SRPRA (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SNHG1   32688
Cards
Entrez_Gene (NCBI)SNHG1    small nucleolar RNA host gene 1
AliasesLINC00057; NCRNA00057; U22HG; UHG; 
lncRNA16
GeneCards (Weizmann)SNHG1
Ensembl hg19 (Hinxton)ENSG00000255717 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255717 [Gene_View]  ENSG00000255717 [Sequence]  chr11:62851978-62855885 [Contig_View]  SNHG1 [Vega]
ICGC DataPortalENSG00000255717
TCGA cBioPortalSNHG1
AceView (NCBI)SNHG1
Genatlas (Paris)SNHG1
SOURCE (Princeton)SNHG1
Genetics Home Reference (NIH)SNHG1
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG1  -     chr11:62851978-62855885 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG1  -     11q12.3   [Description]    (hg19-Feb_2009)
GoldenPathSNHG1 - 11q12.3 [CytoView hg19]  SNHG1 - 11q12.3 [CytoView hg38]
ImmunoBaseENSG00000255717
Genome Data Viewer NCBISNHG1 [Mapview hg19]  
OMIM603222   
Gene and transcription
Genbank (Entrez)AA877654 AK095849 BC000839 BC011809 BC017253
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG1
Gene ExpressionSNHG1 [ NCBI-GEO ]   SNHG1 [ EBI - ARRAY_EXPRESS ]   SNHG1 [ SEEK ]   SNHG1 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG1 [ Firebrowse - Broad ]
GenevisibleExpression of SNHG1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23642
GTEX Portal (Tissue expression)SNHG1
Human Protein AtlasENSG00000255717-SNHG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG1
Human Protein Atlas [tissue]ENSG00000255717-SNHG1 [tissue]
Protein Interaction databases
BioGRIDSNHG1
STRING (EMBL)SNHG1
ZODIACSNHG1
Ontologies - Pathways
Litterature
PubMed95 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSNHG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:32:22 CEST 2021

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