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SNHG1 (small nucleolar RNA host gene 1)

Identity

Alias_namessmall nucleolar RNA host gene 1 (non-protein coding)
Alias_symbol (synonym)UHG
NCRNA00057
LINC00057
Other aliasU22HG
HGNC (Hugo) SNHG1
LocusID (NCBI) 23642
Atlas_Id 55444
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62619460 and ends at 62623360 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KCNQ4 (1p34.2) / SNHG1 (11q12.3)NECTIN1 (11q23.3) / SNHG1 (11q12.3)RHOT1 (17q11.2) / SNHG1 (11q12.3)
SLC50A1 (1q22) / SNHG1 (11q12.3)SNHG1 (11q12.3) / ACTB (7p22.1)SNHG1 (11q12.3) / EEF1A1 (6q13)
SNHG1 (11q12.3) / EHD1 (11q13.1)SNHG1 (11q12.3) / FEZ1 (11q24.2)SNHG1 (11q12.3) / GDI1 (Xq28)
SNHG1 (11q12.3) / GHITM (10q23.1)SNHG1 (11q12.3) / HLA-G (6p22.1)SNHG1 (11q12.3) / LDB3 (10q23.2)
SNHG1 (11q12.3) / SEC61A1 (3q21.3)SNHG1 (11q12.3) / SLC27A5 (19q13.43)SNHG1 (11q12.3) / SNHG1 (11q12.3)
SNHG1 (11q12.3) / SNX2 (5q23.2)SNHG1 (11q12.3) / SRPRA (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG1   32688
Cards
Entrez_Gene (NCBI)SNHG1  23642  small nucleolar RNA host gene 1
AliasesLINC00057; NCRNA00057; U22HG; UHG
GeneCards (Weizmann)SNHG1
Ensembl hg19 (Hinxton)ENSG00000255717 [Gene_View]  chr11:62619460-62623360 [Contig_View]  SNHG1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000255717 [Gene_View]  chr11:62619460-62623360 [Contig_View]  SNHG1 [Vega]
ICGC DataPortalENSG00000255717
TCGA cBioPortalSNHG1
AceView (NCBI)SNHG1
Genatlas (Paris)SNHG1
WikiGenes23642
SOURCE (Princeton)SNHG1
Genetics Home Reference (NIH)SNHG1
Genomic and cartography
GoldenPath hg19 (UCSC)SNHG1  -     chr11:62619460-62623360 -  11q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNHG1  -     11q12.3   [Description]    (hg38-Dec_2013)
EnsemblSNHG1 - 11q12.3 [CytoView hg19]  SNHG1 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBISNHG1 [Mapview hg19]  SNHG1 [Mapview hg38]
OMIM603222   
Gene and transcription
Genbank (Entrez)AK095849 BC000839 BC011809 BC017253 BC027980
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)SNHG1
Cluster EST : UnigeneHs.655643 [ NCBI ]
CGAP (NCI)Hs.655643
Alternative Splicing GalleryENSG00000255717
Gene ExpressionSNHG1 [ NCBI-GEO ]   SNHG1 [ EBI - ARRAY_EXPRESS ]   SNHG1 [ SEEK ]   SNHG1 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)23642
GTEX Portal (Tissue expression)SNHG1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG1
DMDM Disease mutations23642
Blocks (Seattle)SNHG1
Human Protein AtlasENSG00000255717
Protein Interaction databases
FunCoupENSG00000255717
BioGRIDSNHG1
STRING (EMBL)SNHG1
ZODIACSNHG1
Ontologies - Pathways
Huge Navigator SNHG1 [HugePedia]
snp3D : Map Gene to Disease23642
BioCentury BCIQSNHG1
ClinGenSNHG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23642
Chemical/Pharm GKB GenePA147357289
Clinical trialSNHG1
Miscellaneous
canSAR (ICR)SNHG1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG1
EVEXSNHG1
GoPubMedSNHG1
iHOPSNHG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:28:26 CET 2017

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